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  5. Solyc06g071620

Solyc06g071620


Description : U5 small nuclear ribonucleoprotein helicase (AHRD V3.3 *** AT1G20960.2)


Gene families : OG_42_0000868 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000868_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc06g071620
Cluster HCCA clusters: Cluster_82

Target Alias Description ECC score Gene Family Method Actions
410613 No alias U5 small nuclear ribonucleoprotein helicase 0.01 Orthogroups_2024-Update
Glyma.06G202500 No alias U5 small nuclear ribonucleoprotein helicase 0.03 Orthogroups_2024-Update
Sobic.001G028200.1 No alias RNA helicase *(Brr2) 0.03 Orthogroups_2024-Update
evm.model.tig00020675.30 No alias (at3g27730 : 282.0) DNA helicase required for... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
BP GO:0005976 polysaccharide metabolic process IEP Predicted GO
BP GO:0016042 lipid catabolic process IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 411 586
IPR011545 DEAD/DEAH_box_helicase_dom 1257 1425
IPR001650 Helicase_C 637 786
IPR004179 Sec63-dom 910 1211
IPR004179 Sec63-dom 1729 2001
No external refs found!