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  5. Solyc06g071840

Solyc06g071840


Description : Pectate lyase (AHRD V3.3 *-* M1CKT3_SOLTU)


Gene families : OG_42_0000086 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000086_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc06g071840
Cluster HCCA clusters: Cluster_296

Target Alias Description ECC score Gene Family Method Actions
A4A49_23917 No alias putative pectate lyase 13 0.03 Orthogroups_2024-Update
At4g13710 No alias Probable pectate lyase 15... 0.07 Orthogroups_2024-Update
Glyma.06G174700 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
LOC_Os06g05260 No alias pectate lyase precursor, putative, expressed 0.01 Orthogroups_2024-Update
MA_10428603g0020 No alias (at1g67750 : 571.0) Pectate lyase family protein;... 0.03 Orthogroups_2024-Update
Potri.006G122000 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.011G008000 No alias root hair specific 14 0.03 Orthogroups_2024-Update
Solyc02g067450 No alias Pectate lyase (AHRD V3.3 *** M1A9L8_SOLTU) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002022 Pec_lyase 2 77
No external refs found!