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  5. Kfl00240_0230

Kfl00240_0230 (kfl00240_0230_v1.1)


Aliases : kfl00240_0230_v1.1

Description : (at3g49180 : 231.0) ROOT INITIATION DEFECTIVE 3 (RID3); CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G11160.1); Has 42486 Blast hits to 21489 proteins in 714 species: Archae - 48; Bacteria - 7251; Metazoa - 15456; Fungi - 9258; Plants - 4698; Viruses - 0; Other Eukaryotes - 5775 (source: NCBI BLink). & (reliability: 462.0) & (original description: no original description)


Gene families : OG_42_0003575 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003575_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Klebsormidium release: Kfl00240_0230
Cluster HCCA clusters: Cluster_29

Target Alias Description ECC score Gene Family Method Actions
Brara.A02191.1 No alias pre-40S ribosomal subunit assembly factor *(RID3) 0.02 Orthogroups_2024-Update
Solyc04g078780 No alias Transducin/WD40 repeat protein (AHRD V3.3 *** A0A072VH71_MEDTR) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Predicted GO
MF GO:0000049 tRNA binding IEP Predicted GO
MF GO:0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity IEP Predicted GO
BP GO:0006188 IMP biosynthetic process IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
MF GO:0015099 nickel cation transmembrane transporter activity IEP Predicted GO
BP GO:0015675 nickel cation transport IEP Predicted GO
MF GO:0016840 carbon-nitrogen lyase activity IEP Predicted GO
MF GO:0016842 amidine-lyase activity IEP Predicted GO
MF GO:0017016 Ras GTPase binding IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
BP GO:0032418 lysosome localization IEP Predicted GO
BP GO:0035444 nickel cation transmembrane transport IEP Predicted GO
BP GO:0046040 IMP metabolic process IEP Predicted GO
MF GO:0046915 transition metal ion transmembrane transporter activity IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Predicted GO
BP GO:0051640 organelle localization IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
InterPro domains Description Start Stop
IPR001680 WD40_repeat 109 146
IPR001680 WD40_repeat 164 203
IPR001680 WD40_repeat 261 293
No external refs found!