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Description : zinc finger (C2H2 type) family protein (AHRD V3.3 --* AT1G11490.2)
Gene families : OG_42_0005394 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005394_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Solanum release: Solyc06g072470 | |
| Cluster | HCCA clusters: Cluster_76 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| A4A49_13639 | No alias | 50s ribosomal protein l29, chloroplastic | 0.03 | Orthogroups_2024-Update | |
| Bradi3g58780 | No alias | Ribosomal L29 family protein | 0.09 | Orthogroups_2024-Update | |
| Brara.B03943.1 | No alias | component *(uL29c) of large plastid ribosomal-subunit proteome | 0.07 | Orthogroups_2024-Update | |
| Brara.F02392.1 | No alias | Unknown function | 0.05 | Orthogroups_2024-Update | |
| HORVU6Hr1G078290.1 | No alias | component *(uL29c) of large plastid ribosomal-subunit proteome | 0.07 | Orthogroups_2024-Update | |
| Kfl00134_0120 | kfl00134_0120_v1.1 | (q9swi6|rk29_maize : 81.6) 50S ribosomal protein L29,... | 0.02 | Orthogroups_2024-Update | |
| MA_10431457g0010 | No alias | (at5g65220 : 152.0) Ribosomal L29 family protein ;... | 0.05 | Orthogroups_2024-Update | |
| Mp4g10390.1 | No alias | component psRPL29 of large ribosomal subunit proteome | 0.02 | Orthogroups_2024-Update | |
| Potri.007G093700 | No alias | Ribosomal L29 family protein | 0.09 | Orthogroups_2024-Update | |
| Pp1s224_36V6 | No alias | 50s ribosomal protein chloroplast | 0.06 | Orthogroups_2024-Update | |
| Pp1s89_23V6 | No alias | 50s ribosomal protein l29 | 0.06 | Orthogroups_2024-Update | |
| Seita.1G324700.1 | No alias | component *(uL29c) of large plastid ribosomal-subunit proteome | 0.08 | Orthogroups_2024-Update | |
| Sobic.004G231800.1 | No alias | component *(uL29c) of large plastid ribosomal-subunit proteome | 0.08 | Orthogroups_2024-Update | |
| Sopen03g028660 | No alias | Ribosomal L29 protein | 0.05 | Orthogroups_2024-Update | |
| Sopen06g028840 | No alias | Ribosomal L29 protein | 0.09 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003723 | RNA binding | IEP | Predicted GO |
| MF | GO:0003735 | structural constituent of ribosome | IEP | Predicted GO |
| MF | GO:0003747 | translation release factor activity | IEP | Predicted GO |
| MF | GO:0003989 | acetyl-CoA carboxylase activity | IEP | Predicted GO |
| MF | GO:0004133 | glycogen debranching enzyme activity | IEP | Predicted GO |
| MF | GO:0004134 | 4-alpha-glucanotransferase activity | IEP | Predicted GO |
| MF | GO:0004357 | glutamate-cysteine ligase activity | IEP | Predicted GO |
| MF | GO:0004645 | phosphorylase activity | IEP | Predicted GO |
| MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | Predicted GO |
| MF | GO:0004813 | alanine-tRNA ligase activity | IEP | Predicted GO |
| MF | GO:0005198 | structural molecule activity | IEP | Predicted GO |
| MF | GO:0005509 | calcium ion binding | IEP | Predicted GO |
| CC | GO:0005575 | cellular_component | IEP | Predicted GO |
| CC | GO:0005622 | intracellular | IEP | Predicted GO |
| CC | GO:0005840 | ribosome | IEP | Predicted GO |
| BP | GO:0005975 | carbohydrate metabolic process | IEP | Predicted GO |
| BP | GO:0005984 | disaccharide metabolic process | IEP | Predicted GO |
| BP | GO:0005985 | sucrose metabolic process | IEP | Predicted GO |
| BP | GO:0005986 | sucrose biosynthetic process | IEP | Predicted GO |
| BP | GO:0006399 | tRNA metabolic process | IEP | Predicted GO |
| BP | GO:0006412 | translation | IEP | Predicted GO |
| BP | GO:0006415 | translational termination | IEP | Predicted GO |
| BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | Predicted GO |
| BP | GO:0006419 | alanyl-tRNA aminoacylation | IEP | Predicted GO |
| BP | GO:0006518 | peptide metabolic process | IEP | Predicted GO |
| MF | GO:0008079 | translation termination factor activity | IEP | Predicted GO |
| MF | GO:0008135 | translation factor activity, RNA binding | IEP | Predicted GO |
| BP | GO:0008152 | metabolic process | IEP | Predicted GO |
| MF | GO:0008184 | glycogen phosphorylase activity | IEP | Predicted GO |
| BP | GO:0009058 | biosynthetic process | IEP | Predicted GO |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | Predicted GO |
| BP | GO:0009311 | oligosaccharide metabolic process | IEP | Predicted GO |
| CC | GO:0009317 | acetyl-CoA carboxylase complex | IEP | Predicted GO |
| CC | GO:0009521 | photosystem | IEP | Predicted GO |
| CC | GO:0009523 | photosystem II | IEP | Predicted GO |
| CC | GO:0009654 | photosystem II oxygen evolving complex | IEP | Predicted GO |
| BP | GO:0009987 | cellular process | IEP | Predicted GO |
| BP | GO:0015979 | photosynthesis | IEP | Predicted GO |
| MF | GO:0016149 | translation release factor activity, codon specific | IEP | Predicted GO |
| MF | GO:0016157 | sucrose synthase activity | IEP | Predicted GO |
| MF | GO:0016421 | CoA carboxylase activity | IEP | Predicted GO |
| MF | GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | IEP | Predicted GO |
| MF | GO:0016624 | oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor | IEP | Predicted GO |
| MF | GO:0016874 | ligase activity | IEP | Predicted GO |
| MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | Predicted GO |
| MF | GO:0016881 | acid-amino acid ligase activity | IEP | Predicted GO |
| MF | GO:0016885 | ligase activity, forming carbon-carbon bonds | IEP | Predicted GO |
| MF | GO:0019203 | carbohydrate phosphatase activity | IEP | Predicted GO |
| MF | GO:0019843 | rRNA binding | IEP | Predicted GO |
| CC | GO:0019898 | extrinsic component of membrane | IEP | Predicted GO |
| BP | GO:0022411 | cellular component disassembly | IEP | Predicted GO |
| BP | GO:0032984 | protein-containing complex disassembly | IEP | Predicted GO |
| CC | GO:0032991 | protein-containing complex | IEP | Predicted GO |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Predicted GO |
| BP | GO:0034660 | ncRNA metabolic process | IEP | Predicted GO |
| BP | GO:0042398 | cellular modified amino acid biosynthetic process | IEP | Predicted GO |
| BP | GO:0043038 | amino acid activation | IEP | Predicted GO |
| BP | GO:0043039 | tRNA aminoacylation | IEP | Predicted GO |
| BP | GO:0043043 | peptide biosynthetic process | IEP | Predicted GO |
| CC | GO:0043226 | organelle | IEP | Predicted GO |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | Predicted GO |
| CC | GO:0043229 | intracellular organelle | IEP | Predicted GO |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Predicted GO |
| BP | GO:0043603 | cellular amide metabolic process | IEP | Predicted GO |
| BP | GO:0043604 | amide biosynthetic process | IEP | Predicted GO |
| BP | GO:0043624 | cellular protein complex disassembly | IEP | Predicted GO |
| BP | GO:0043933 | protein-containing complex subunit organization | IEP | Predicted GO |
| BP | GO:0044237 | cellular metabolic process | IEP | Predicted GO |
| BP | GO:0044238 | primary metabolic process | IEP | Predicted GO |
| BP | GO:0044249 | cellular biosynthetic process | IEP | Predicted GO |
| BP | GO:0044267 | cellular protein metabolic process | IEP | Predicted GO |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Predicted GO |
| CC | GO:0044424 | intracellular part | IEP | Predicted GO |
| CC | GO:0044444 | cytoplasmic part | IEP | Predicted GO |
| CC | GO:0044464 | cell part | IEP | Predicted GO |
| MF | GO:0050307 | sucrose-phosphate phosphatase activity | IEP | Predicted GO |
| MF | GO:0050308 | sugar-phosphatase activity | IEP | Predicted GO |
| BP | GO:0071704 | organic substance metabolic process | IEP | Predicted GO |
| MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | Predicted GO |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Predicted GO |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | Predicted GO |
| CC | GO:1902494 | catalytic complex | IEP | Predicted GO |
| CC | GO:1990204 | oxidoreductase complex | IEP | Predicted GO |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | Predicted GO |
No InterPro domains available for this sequence
| No external refs found! |