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  5. Solyc06g072490

Solyc06g072490


Description : 40S ribosomal protein S3a (AHRD V3.3 *** RS3A_TOBAC)


Gene families : OG_42_0001814 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001814_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc06g072490
Cluster HCCA clusters: Cluster_102

Target Alias Description ECC score Gene Family Method Actions
271906 No alias Ribosomal protein S3Ae 0.09 Orthogroups_2024-Update
271907 No alias Ribosomal protein S3Ae 0.08 Orthogroups_2024-Update
A4A49_56002 No alias 40s ribosomal protein s3a 0.12 Orthogroups_2024-Update
At3g04840 No alias 40S ribosomal protein S3a-1... 0.05 Orthogroups_2024-Update
Bradi1g71200 No alias Ribosomal protein S3Ae 0.17 Orthogroups_2024-Update
Bradi1g78170 No alias Ribosomal protein S3Ae 0.3 Orthogroups_2024-Update
Bradi3g01210 No alias Ribosomal protein S3Ae 0.23 Orthogroups_2024-Update
Brara.A00356.1 No alias component *(eS1) of small ribosomal-subunit (SSU) proteome 0.11 Orthogroups_2024-Update
Brara.A03750.1 No alias component *(eS1) of small ribosomal-subunit (SSU) proteome 0.3 Orthogroups_2024-Update
Brara.C03077.1 No alias component *(eS1) of small ribosomal-subunit (SSU) proteome 0.37 Orthogroups_2024-Update
Brara.E03419.1 No alias component *(eS1) of small ribosomal-subunit (SSU) proteome 0.4 Orthogroups_2024-Update
Brara.H01188.1 No alias component *(eS1) of small ribosomal-subunit (SSU) proteome 0.15 Orthogroups_2024-Update
Brara.K00335.1 No alias component *(eS1) of small ribosomal-subunit (SSU) proteome 0.06 Orthogroups_2024-Update
Cre13.g568650 No alias Ribosomal protein S3Ae 0.17 Orthogroups_2024-Update
GRMZM2G145258 No alias Ribosomal protein S3Ae 0.17 Orthogroups_2024-Update
Glyma.01G236600 No alias Ribosomal protein S3Ae 0.06 Orthogroups_2024-Update
Glyma.10G245200 No alias Ribosomal protein S3Ae 0.14 Orthogroups_2024-Update
Glyma.11G006600 No alias Ribosomal protein S3Ae 0.18 Orthogroups_2024-Update
Glyma.20G149400 No alias Ribosomal protein S3Ae 0.04 Orthogroups_2024-Update
HORVU1Hr1G032060.4 No alias component *(eS1) of small ribosomal-subunit (SSU) proteome 0.07 Orthogroups_2024-Update
HORVU4Hr1G070370.1 No alias component *(eS1) of small ribosomal-subunit (SSU) proteome 0.25 Orthogroups_2024-Update
Kfl00143_0140 kfl00143_0140_v1.1 (p33444|rs3a_catro : 380.0) 40S ribosomal protein S3a... 0.04 Orthogroups_2024-Update
LOC_Os03g10340 No alias 40S ribosomal protein S3a, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os12g21798 No alias 40S ribosomal protein S3a, putative, expressed 0.04 Orthogroups_2024-Update
MA_31004g0010 No alias (at4g34670 : 389.0) Ribosomal protein S3Ae; FUNCTIONS... 0.09 Orthogroups_2024-Update
Mp6g02810.1 No alias component RPS3a of SSU proteome 0.05 Orthogroups_2024-Update
PSME_00005371-RA No alias (at4g34670 : 408.0) Ribosomal protein S3Ae; FUNCTIONS... 0.07 Orthogroups_2024-Update
Potri.005G051200 No alias Ribosomal protein S3Ae 0.09 Orthogroups_2024-Update
Potri.008G156300 No alias Ribosomal protein S3Ae 0.09 Orthogroups_2024-Update
Potri.010G083200 No alias Ribosomal protein S3Ae 0.05 Orthogroups_2024-Update
Pp1s179_15V6 No alias 40s ribosomal protein s3a 0.21 Orthogroups_2024-Update
Pp1s17_306V6 No alias 40s ribosomal protein s3a 0.17 Orthogroups_2024-Update
Pp1s219_50V6 No alias 40s ribosomal protein s3a 0.27 Orthogroups_2024-Update
Pp1s92_47V6 No alias 40s ribosomal protein s3a 0.04 Orthogroups_2024-Update
Seita.2G378300.1 No alias component *(eS1) of small ribosomal-subunit (SSU) proteome 0.25 Orthogroups_2024-Update
Seita.9G502500.1 No alias component *(eS1) of small ribosomal-subunit (SSU) proteome 0.23 Orthogroups_2024-Update
Sobic.001G467300.3 No alias component *(eS1) of small ribosomal-subunit (SSU) proteome 0.17 Orthogroups_2024-Update
Sobic.002G364100.1 No alias component *(eS1) of small ribosomal-subunit (SSU) proteome 0.42 Orthogroups_2024-Update
Sobic.002G364500.1 No alias component *(eS1) of small ribosomal-subunit (SSU) proteome 0.23 Orthogroups_2024-Update
Sopen06g028860 No alias Ribosomal S3Ae family 0.39 Orthogroups_2024-Update
Sopen09g031380 No alias Ribosomal S3Ae family 0.07 Orthogroups_2024-Update
evm.model.contig_2340.2 No alias (p49397|rs3a_orysa : 304.0) 40S ribosomal protein S3a... 0.47 Orthogroups_2024-Update
evm.model.tig00020710.39 No alias (at4g34670 : 313.0) Ribosomal protein S3Ae; FUNCTIONS... 0.16 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
InterPro domains Description Start Stop
IPR001593 Ribosomal_S3Ae 15 221
No external refs found!