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  5. Kfl00258_0020

Kfl00258_0020 (kfl00258_0020_v1.1)


Aliases : kfl00258_0020_v1.1

Description : (at5g01530 : 324.0) light harvesting complex photosystem II (LHCB4.1); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to blue light, response to red light, response to far red light, photosynthesis; LOCATED IN: in 6 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: light harvesting complex photosystem II (TAIR:AT3G08940.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q93wd2|cb29_chlre : 255.0) Chlorophyll a-b binding protein CP29 - Chlamydomonas reinhardtii & (reliability: 648.0) & (original description: no original description)


Gene families : OG_42_0004123 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004123_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Klebsormidium release: Kfl00258_0020
Cluster HCCA clusters: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
149722 No alias light harvesting complex photosystem II 0.03 Orthogroups_2024-Update
At3g08940 No alias Chlorophyll a-b binding protein CP29.2, chloroplastic... 0.06 Orthogroups_2024-Update
At5g01530 No alias Chlorophyll a-b binding protein CP29.1, chloroplastic... 0.06 Orthogroups_2024-Update
Bradi1g24870 No alias light harvesting complex photosystem II 0.09 Orthogroups_2024-Update
Brara.B00018.1 No alias component *(LHCb4) of LHC-II complex 0.05 Orthogroups_2024-Update
Brara.E03123.1 No alias component *(LHCb4) of LHC-II complex 0.09 Orthogroups_2024-Update
Cre17.g720250 No alias light harvesting complex photosystem II 0.11 Orthogroups_2024-Update
Glyma.01G115900 No alias light harvesting complex photosystem II 0.09 Orthogroups_2024-Update
Glyma.03G060300 No alias light harvesting complex photosystem II 0.1 Orthogroups_2024-Update
Glyma.18G028400 No alias light harvesting complex photosystem II 0.03 Orthogroups_2024-Update
HORVU2Hr1G041270.2 No alias Unknown function 0.04 Orthogroups_2024-Update
HORVU2Hr1G041280.1 No alias Unknown function 0.05 Orthogroups_2024-Update
LOC_Os07g37240 No alias chlorophyll A-B binding protein, putative, expressed 0.06 Orthogroups_2024-Update
MA_129206g0010 No alias (at2g40100 : 288.0) Lhcb4:3 protein (Lhcb4.3, light... 0.1 Orthogroups_2024-Update
Mp1g16850.1 No alias component LHCb4 of LHC-II complex 0.1 Orthogroups_2024-Update
PSME_00005803-RA No alias (at3g08940 : 324.0) Lhcb4.2 protein (Lhcb4.2, protein... 0.08 Orthogroups_2024-Update
Potri.006G099500 No alias light harvesting complex photosystem II 0.05 Orthogroups_2024-Update
Pp1s155_34V6 No alias chlorophyll a b binding 0.02 Orthogroups_2024-Update
Pp1s472_15V6 No alias chlorophyll a b binding 0.04 Orthogroups_2024-Update
Seita.2G351600.1 No alias component *(LHCb4) of LHC-II complex 0.03 Orthogroups_2024-Update
Sobic.002G338000.1 No alias component *(LHCb4) of LHC-II complex 0.08 Orthogroups_2024-Update
Solyc09g014520 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.08 Orthogroups_2024-Update
Sopen09g007360 No alias Chlorophyll A-B binding protein 0.1 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
BP GO:0006066 alcohol metabolic process IEP Predicted GO
BP GO:0006729 tetrahydrobiopterin biosynthetic process IEP Predicted GO
MF GO:0008124 4-alpha-hydroxytetrahydrobiopterin dehydratase activity IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
MF GO:0008483 transaminase activity IEP Predicted GO
MF GO:0008883 glutamyl-tRNA reductase activity IEP Predicted GO
CC GO:0009521 photosystem IEP Predicted GO
CC GO:0009522 photosystem I IEP Predicted GO
CC GO:0009523 photosystem II IEP Predicted GO
CC GO:0009538 photosystem I reaction center IEP Predicted GO
CC GO:0009654 photosystem II oxygen evolving complex IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0010109 regulation of photosynthesis IEP Predicted GO
BP GO:0010207 photosystem II assembly IEP Predicted GO
MF GO:0010242 oxygen evolving activity IEP Predicted GO
BP GO:0015979 photosynthesis IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Predicted GO
MF GO:0016835 carbon-oxygen lyase activity IEP Predicted GO
MF GO:0016836 hydro-lyase activity IEP Predicted GO
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Predicted GO
BP GO:0019751 polyol metabolic process IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
MF GO:0030145 manganese ion binding IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0033014 tetrapyrrole biosynthetic process IEP Predicted GO
BP GO:0034311 diol metabolic process IEP Predicted GO
BP GO:0034312 diol biosynthetic process IEP Predicted GO
CC GO:0034357 photosynthetic membrane IEP Predicted GO
BP GO:0042548 regulation of photosynthesis, light reaction IEP Predicted GO
BP GO:0042549 photosystem II stabilization IEP Predicted GO
BP GO:0042558 pteridine-containing compound metabolic process IEP Predicted GO
BP GO:0042559 pteridine-containing compound biosynthetic process IEP Predicted GO
CC GO:0042651 thylakoid membrane IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
CC GO:0044436 thylakoid part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0046146 tetrahydrobiopterin metabolic process IEP Predicted GO
BP GO:0046165 alcohol biosynthetic process IEP Predicted GO
BP GO:0046173 polyol biosynthetic process IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0050661 NADP binding IEP Predicted GO
BP GO:0055114 oxidation-reduction process IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
BP GO:1901615 organic hydroxy compound metabolic process IEP Predicted GO
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
CC GO:1990204 oxidoreductase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 83 280
No external refs found!