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  5. Kfl00271_0060

Kfl00271_0060 (kfl00271_0060_v1.1)


Aliases : kfl00271_0060_v1.1

Description : (at3g47120 : 229.0) RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: glycine-rich RNA-binding protein 3 (TAIR:AT5G61030.1); Has 201898 Blast hits to 124021 proteins in 4668 species: Archae - 159; Bacteria - 19385; Metazoa - 64482; Fungi - 8819; Plants - 85595; Viruses - 264; Other Eukaryotes - 23194 (source: NCBI BLink). & (reliability: 458.0) & (original description: no original description)


Gene families : OG_42_0006511 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006511_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Klebsormidium release: Kfl00271_0060
Cluster HCCA clusters: Cluster_35

Target Alias Description ECC score Gene Family Method Actions
Cre06.g280550 No alias RNA recognition motif (RRM)-containing protein 0.03 Orthogroups_2024-Update
Glyma.14G192900 No alias RNA recognition motif (RRM)-containing protein 0.03 Orthogroups_2024-Update
LOC_Os03g61110 No alias RNA-binding motif protein, putative, expressed 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0046872 metal ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
MF GO:0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEP Predicted GO
MF GO:0015020 glucuronosyltransferase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 135 155
IPR000504 RRM_dom 38 107
No external refs found!