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  5. Solyc06g073260

Solyc06g073260


Description : chloroplast RNA binding protein (AHRD V3.3 *** AT1G09340.1)


Gene families : OG_42_0003865 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003865_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc06g073260
Cluster HCCA clusters: Cluster_12

Target Alias Description ECC score Gene Family Method Actions
107618 No alias chloroplast RNA binding 0.03 Orthogroups_2024-Update
At1g09340 No alias chloroplast RNA binding [Source:TAIR;Acc:AT1G09340] 0.06 Orthogroups_2024-Update
Bradi4g08030 No alias chloroplast RNA binding 0.02 Orthogroups_2024-Update
Glyma.03G230000 No alias chloroplast RNA binding 0.05 Orthogroups_2024-Update
Glyma.19G227700 No alias chloroplast RNA binding 0.09 Orthogroups_2024-Update
HORVU2Hr1G029230.1 No alias endoribonuclease *(CSP41) 0.06 Orthogroups_2024-Update
HORVU2Hr1G036220.1 No alias endoribonuclease *(CSP41) 0.04 Orthogroups_2024-Update
HORVU2Hr1G053340.3 No alias endoribonuclease *(CSP41) 0.02 Orthogroups_2024-Update
HORVU4Hr1G052270.4 No alias endoribonuclease *(CSP41) 0.02 Orthogroups_2024-Update
HORVU5Hr1G009200.2 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os12g23180 No alias 3-beta hydroxysteroid dehydrogenase/isomerase family... 0.02 Orthogroups_2024-Update
MA_196108g0010 No alias (at1g09340 : 139.0) Encodes CHLOROPLAST RNA BINDING... 0.03 Orthogroups_2024-Update
Mp1g11680.1 No alias endoribonuclease (CSP41) 0.06 Orthogroups_2024-Update
PSME_00001882-RA No alias (at1g09340 : 556.0) Encodes CHLOROPLAST RNA BINDING... 0.03 Orthogroups_2024-Update
Potri.013G006100 No alias chloroplast RNA binding 0.06 Orthogroups_2024-Update
Pp1s71_283V6 No alias nad-dependent epimerase dehydratase 0.13 Orthogroups_2024-Update
Seita.3G304400.1 No alias endoribonuclease *(CSP41) 0.04 Orthogroups_2024-Update
Sobic.008G066100.1 No alias endoribonuclease *(CSP41) 0.03 Orthogroups_2024-Update
Sopen06g029620 No alias NAD dependent epimerase/dehydratase family 0.16 Orthogroups_2024-Update
evm.model.contig_3495.2 No alias (at1g09340 : 335.0) Encodes CHLOROPLAST RNA BINDING... 0.05 Orthogroups_2024-Update
evm.model.tig00021181.14 No alias (at1g09340 : 348.0) Encodes CHLOROPLAST RNA BINDING... 0.03 Orthogroups_2024-Update
evm.model.tig00021720.14 No alias (at1g09340 : 242.0) Encodes CHLOROPLAST RNA BINDING... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA InterProScan predictions
MF GO:0050662 coenzyme binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004089 carbonate dehydratase activity IEP Predicted GO
MF GO:0004096 catalase activity IEP Predicted GO
MF GO:0004618 phosphoglycerate kinase activity IEP Predicted GO
MF GO:0004751 ribose-5-phosphate isomerase activity IEP Predicted GO
MF GO:0004807 triose-phosphate isomerase activity IEP Predicted GO
BP GO:0006081 cellular aldehyde metabolic process IEP Predicted GO
BP GO:0006091 generation of precursor metabolites and energy IEP Predicted GO
BP GO:0006536 glutamate metabolic process IEP Predicted GO
BP GO:0006537 glutamate biosynthetic process IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP Predicted GO
BP GO:0009064 glutamine family amino acid metabolic process IEP Predicted GO
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Predicted GO
MF GO:0009496 plastoquinol--plastocyanin reductase activity IEP Predicted GO
CC GO:0009512 cytochrome b6f complex IEP Predicted GO
MF GO:0015930 glutamate synthase activity IEP Predicted GO
BP GO:0016053 organic acid biosynthetic process IEP Predicted GO
BP GO:0016226 iron-sulfur cluster assembly IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP Predicted GO
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Predicted GO
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP Predicted GO
MF GO:0016774 phosphotransferase activity, carboxyl group as acceptor IEP Predicted GO
MF GO:0016835 carbon-oxygen lyase activity IEP Predicted GO
MF GO:0016836 hydro-lyase activity IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016860 intramolecular oxidoreductase activity IEP Predicted GO
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Predicted GO
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Predicted GO
BP GO:0019693 ribose phosphate metabolic process IEP Predicted GO
BP GO:0031163 metallo-sulfur cluster assembly IEP Predicted GO
CC GO:0034357 photosynthetic membrane IEP Predicted GO
CC GO:0042651 thylakoid membrane IEP Predicted GO
BP GO:0043648 dicarboxylic acid metabolic process IEP Predicted GO
BP GO:0043650 dicarboxylic acid biosynthetic process IEP Predicted GO
CC GO:0044436 thylakoid part IEP Predicted GO
BP GO:0046394 carboxylic acid biosynthetic process IEP Predicted GO
BP GO:0051186 cofactor metabolic process IEP Predicted GO
MF GO:0051536 iron-sulfur cluster binding IEP Predicted GO
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Predicted GO
MF GO:0051540 metal cluster binding IEP Predicted GO
MF GO:0052880 oxidoreductase activity, acting on diphenols and related substances as donors, with copper protein as acceptor IEP Predicted GO
BP GO:0055114 oxidation-reduction process IEP Predicted GO
CC GO:0070069 cytochrome complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001509 Epimerase_deHydtase 56 273
No external refs found!