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  5. Solyc06g073340

Solyc06g073340


Description : RING/U-box superfamily protein (AHRD V3.3 *** AT1G05890.1)


Gene families : OG_42_0000347 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000347_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc06g073340
Cluster HCCA clusters: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
At2g31780 No alias RING/U-box superfamily protein [Source:TAIR;Acc:AT2G31780] 0.04 Orthogroups_2024-Update
Brara.B01625.1 No alias RBR-Ariadne-class E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Cre16.g682350 No alias IBR domain-containing protein 0.02 Orthogroups_2024-Update
LOC_Os03g13100 No alias ariadne-1, putative, expressed 0.03 Orthogroups_2024-Update
MA_88915g0010 No alias (at1g65430 : 735.0) ARIADNE 8 (ARI8); FUNCTIONS IN:... 0.02 Orthogroups_2024-Update
Potri.008G077100 No alias IBR domain-containing protein 0.02 Orthogroups_2024-Update
Pp1s102_135V6 No alias protein ariadne- 0.02 Orthogroups_2024-Update
Seita.9G483400.1 No alias RBR-Ariadne-class E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Sobic.005G210000.1 No alias RBR-Ariadne-class E3 ubiquitin ligase & component... 0.02 Orthogroups_2024-Update
Sobic.007G185900.1 No alias RBR-Ariadne-class E3 ubiquitin ligase 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004519 endonuclease activity IEP Predicted GO
MF GO:0004521 endoribonuclease activity IEP Predicted GO
MF GO:0004525 ribonuclease III activity IEP Predicted GO
MF GO:0004540 ribonuclease activity IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
CC GO:0005669 transcription factor TFIID complex IEP Predicted GO
CC GO:0005875 microtubule associated complex IEP Predicted GO
BP GO:0006352 DNA-templated transcription, initiation IEP Predicted GO
BP GO:0006777 Mo-molybdopterin cofactor biosynthetic process IEP Predicted GO
BP GO:0009108 coenzyme biosynthetic process IEP Predicted GO
CC GO:0009523 photosystem II IEP Predicted GO
CC GO:0009539 photosystem II reaction center IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Predicted GO
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Predicted GO
BP GO:0018130 heterocycle biosynthetic process IEP Predicted GO
CC GO:0019008 molybdopterin synthase complex IEP Predicted GO
BP GO:0019720 Mo-molybdopterin cofactor metabolic process IEP Predicted GO
CC GO:0030286 dynein complex IEP Predicted GO
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0043545 molybdopterin cofactor metabolic process IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044430 cytoskeletal part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044451 nucleoplasm part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
MF GO:0046873 metal ion transmembrane transporter activity IEP Predicted GO
BP GO:0051189 prosthetic group metabolic process IEP Predicted GO
MF GO:0051536 iron-sulfur cluster binding IEP Predicted GO
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Predicted GO
MF GO:0051540 metal cluster binding IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
BP GO:1901362 organic cyclic compound biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002867 IBR_dom 204 266
IPR002867 IBR_dom 283 331
No external refs found!