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  5. Kfl00338_0040

Kfl00338_0040 (kfl00338_0040_v1.1)


Aliases : kfl00338_0040_v1.1

Description : (at5g02310 : 216.0) Encodes PROTEOLYSIS6 (PRT6), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Another component of the N-end rule pathway is arginyl-tRNA:protein arginyltransferase (ATE). Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2. PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination.; proteolysis 6 (PRT6); CONTAINS InterPro DOMAIN/s: Zinc finger, N-recognin, metazoa (InterPro:IPR013993), Zinc finger, N-recognin (InterPro:IPR003126); Has 1893 Blast hits to 778 proteins in 199 species: Archae - 0; Bacteria - 0; Metazoa - 939; Fungi - 577; Plants - 100; Viruses - 0; Other Eukaryotes - 277 (source: NCBI BLink). & (reliability: 432.0) & (original description: no original description)


Gene families : OG_42_0002846 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002846_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Klebsormidium release: Kfl00338_0040
Cluster HCCA clusters: Cluster_114

Target Alias Description ECC score Gene Family Method Actions
Bradi2g03180 No alias proteolysis 6 0.02 Orthogroups_2024-Update
PSME_00008232-RA No alias (at5g02310 : 269.0) Encodes PROTEOLYSIS6 (PRT6), a... 0.01 Orthogroups_2024-Update
PSME_00008233-RA No alias (at5g02310 : 427.0) Encodes PROTEOLYSIS6 (PRT6), a... 0.02 Orthogroups_2024-Update
Pp1s356_43V6 No alias ubiquitin ligase e3 0.02 Orthogroups_2024-Update
Pp1s67_180V6 No alias ubiquitin ligase e3 0.02 Orthogroups_2024-Update
Seita.5G102700.1 No alias type-I-residues E3 ubiquitin ligase *(PRT6) 0.04 Orthogroups_2024-Update
evm.model.tig00001107.13 No alias (at5g02310 : 113.0) Encodes PROTEOLYSIS6 (PRT6), a... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000726 non-recombinational repair IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003684 damaged DNA binding IEP Predicted GO
MF GO:0004674 protein serine/threonine kinase activity IEP Predicted GO
MF GO:0004677 DNA-dependent protein kinase activity IEP Predicted GO
BP GO:0006281 DNA repair IEP Predicted GO
BP GO:0006302 double-strand break repair IEP Predicted GO
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP Predicted GO
BP GO:0006950 response to stress IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0010629 negative regulation of gene expression IEP Predicted GO
BP GO:0010970 transport along microtubule IEP Predicted GO
BP GO:0016458 gene silencing IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
BP GO:0030705 cytoskeleton-dependent intracellular transport IEP Predicted GO
BP GO:0031047 gene silencing by RNA IEP Predicted GO
BP GO:0031503 protein-containing complex localization IEP Predicted GO
MF GO:0032947 protein-containing complex scaffold activity IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
BP GO:0042073 intraciliary transport IEP Predicted GO
BP GO:0043248 proteasome assembly IEP Predicted GO
BP GO:0050896 response to stimulus IEP Predicted GO
BP GO:0051716 cellular response to stimulus IEP Predicted GO
BP GO:0098840 protein transport along microtubule IEP Predicted GO
BP GO:0099111 microtubule-based transport IEP Predicted GO
BP GO:0099118 microtubule-based protein transport IEP Predicted GO
InterPro domains Description Start Stop
IPR003126 Znf_UBR 118 184
No external refs found!