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Aliases : kfl00359_0090_v1.1
Description : (p34899|glym_pea : 701.0) Serine hydroxymethyltransferase, mitochondrial precursor (EC 2.1.2.1) (Serine methylase) (Glycine hydroxymethyltransferase) (SHMT) - Pisum sativum (Garden pea) & (at4g37930 : 696.0) Encodes a protein with mitochondrial serine hydroxymethyltransferase activity, which functions in the photorespiratory pathway, catalyzes the conversion of serine and tetrahydrofolate to glycine and 5,10-methylene tetrahydrofolate. Involved in controlling cell damage caused by abiotic stress, such as high light and salt and the hypersensitive defense response of plants.; serine transhydroxymethyltransferase 1 (SHM1); FUNCTIONS IN: poly(U) RNA binding, glycine hydroxymethyltransferase activity; INVOLVED IN: in 8 processes; LOCATED IN: in 9 components; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Serine hydroxymethyltransferase, pyridoxal phosphate binding site (InterPro:IPR019798), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Serine hydroxymethyltransferase (InterPro:IPR001085); BEST Arabidopsis thaliana protein match is: serine hydroxymethyltransferase 2 (TAIR:AT5G26780.1); Has 11621 Blast hits to 11596 proteins in 2825 species: Archae - 258; Bacteria - 6371; Metazoa - 337; Fungi - 287; Plants - 346; Viruses - 6; Other Eukaryotes - 4016 (source: NCBI BLink). & (reliability: 1392.0) & (original description: no original description)
Gene families : OG_42_0000626 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000626_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Klebsormidium release: Kfl00359_0090 | |
| Cluster | HCCA clusters: Cluster_81 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| GRMZM2G078143 | No alias | serine hydroxymethyltransferase 4 | 0.02 | Orthogroups_2024-Update | |
| Pp1s21_270V6 | No alias | glycine hydroxymethyltransferase | 0.03 | Orthogroups_2024-Update | |
| evm.model.contig_2050.3 | No alias | (at5g26780 : 637.0) Encodes a protein with serine... | 0.02 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003989 | acetyl-CoA carboxylase activity | IEP | Predicted GO |
| MF | GO:0004392 | heme oxygenase (decyclizing) activity | IEP | Predicted GO |
| BP | GO:0006605 | protein targeting | IEP | Predicted GO |
| BP | GO:0006612 | protein targeting to membrane | IEP | Predicted GO |
| BP | GO:0006613 | cotranslational protein targeting to membrane | IEP | Predicted GO |
| BP | GO:0006614 | SRP-dependent cotranslational protein targeting to membrane | IEP | Predicted GO |
| BP | GO:0006631 | fatty acid metabolic process | IEP | Predicted GO |
| BP | GO:0006633 | fatty acid biosynthetic process | IEP | Predicted GO |
| BP | GO:0006778 | porphyrin-containing compound metabolic process | IEP | Predicted GO |
| BP | GO:0006788 | heme oxidation | IEP | Predicted GO |
| BP | GO:0008104 | protein localization | IEP | Predicted GO |
| MF | GO:0008289 | lipid binding | IEP | Predicted GO |
| MF | GO:0008312 | 7S RNA binding | IEP | Predicted GO |
| CC | GO:0009317 | acetyl-CoA carboxylase complex | IEP | Predicted GO |
| MF | GO:0009916 | alternative oxidase activity | IEP | Predicted GO |
| BP | GO:0015031 | protein transport | IEP | Predicted GO |
| BP | GO:0015833 | peptide transport | IEP | Predicted GO |
| MF | GO:0016421 | CoA carboxylase activity | IEP | Predicted GO |
| MF | GO:0016679 | oxidoreductase activity, acting on diphenols and related substances as donors | IEP | Predicted GO |
| MF | GO:0016682 | oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor | IEP | Predicted GO |
| MF | GO:0016885 | ligase activity, forming carbon-carbon bonds | IEP | Predicted GO |
| BP | GO:0033013 | tetrapyrrole metabolic process | IEP | Predicted GO |
| BP | GO:0033036 | macromolecule localization | IEP | Predicted GO |
| BP | GO:0033365 | protein localization to organelle | IEP | Predicted GO |
| BP | GO:0034613 | cellular protein localization | IEP | Predicted GO |
| BP | GO:0042168 | heme metabolic process | IEP | Predicted GO |
| BP | GO:0042440 | pigment metabolic process | IEP | Predicted GO |
| BP | GO:0042886 | amide transport | IEP | Predicted GO |
| BP | GO:0045047 | protein targeting to ER | IEP | Predicted GO |
| BP | GO:0045184 | establishment of protein localization | IEP | Predicted GO |
| CC | GO:0048500 | signal recognition particle | IEP | Predicted GO |
| BP | GO:0070727 | cellular macromolecule localization | IEP | Predicted GO |
| BP | GO:0070972 | protein localization to endoplasmic reticulum | IEP | Predicted GO |
| BP | GO:0071702 | organic substance transport | IEP | Predicted GO |
| BP | GO:0071705 | nitrogen compound transport | IEP | Predicted GO |
| BP | GO:0072594 | establishment of protein localization to organelle | IEP | Predicted GO |
| BP | GO:0072599 | establishment of protein localization to endoplasmic reticulum | IEP | Predicted GO |
| BP | GO:0072657 | protein localization to membrane | IEP | Predicted GO |
| BP | GO:0090150 | establishment of protein localization to membrane | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR039429 | SHMT-like_dom | 66 | 462 |
| No external refs found! |