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  5. Kfl00409_0080

Kfl00409_0080 (kfl00409_0080_v1.1)


Aliases : kfl00409_0080_v1.1

Description : (at1g53500 : 1034.0) encodes a putative NDP-L-rhamnose synthase, an enzyme required for the synthesis of the pectin rhamnogalacturonan I, the major component of Arabidopsis mucilage. Gene is involved in seed coat mucilage cell development. Mutant analyses suggest that MUM4 is required for complete mucilage synthesis, cytoplasmic rearrangement and seed coat development.; MUCILAGE-MODIFIED 4 (MUM4); FUNCTIONS IN: UDP-4-keto-rhamnose-4-keto-reductase activity, UDP-4-keto-6-deoxy-glucose-3,5-epimerase activity, catalytic activity, UDP-glucose 4,6-dehydratase activity, UDP-L-rhamnose synthase activity; INVOLVED IN: seed coat development, UDP-rhamnose biosynthetic process, mucilage biosynthetic process, metabolic process; LOCATED IN: soluble fraction; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040), dTDP-4-dehydrorhamnose reductase (InterPro:IPR005913); BEST Arabidopsis thaliana protein match is: rhamnose biosynthesis 3 (TAIR:AT3G14790.1); Has 53909 Blast hits to 53717 proteins in 3029 species: Archae - 941; Bacteria - 31079; Metazoa - 1146; Fungi - 539; Plants - 1500; Viruses - 107; Other Eukaryotes - 18597 (source: NCBI BLink). & (q8h0b2|arae3_orysa : 99.8) Probable UDP-arabinose 4-epimerase 3 (EC 5.1.3.5) (UDP-D-xylose 4-epimerase 3) (UDP-galactose 4-epimerase-like protein 3) (OsUEL-3) - Oryza sativa (Rice) & (reliability: 2068.0) & (original description: no original description)


Gene families : OG_42_0000886 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000886_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Klebsormidium release: Kfl00409_0080
Cluster HCCA clusters: Cluster_123

Target Alias Description ECC score Gene Family Method Actions
A4A49_41849 No alias bifunctional dtdp-4-dehydrorhamnose... 0.01 Orthogroups_2024-Update
Brara.E02654.1 No alias UDP-L-rhamnose synthase *(RHM) 0.02 Orthogroups_2024-Update
Brara.F00115.1 No alias UDP-L-rhamnose synthase *(RHM) 0.02 Orthogroups_2024-Update
Cre02.g083800 No alias rhamnose biosynthesis 1 0.01 Orthogroups_2024-Update
Cre09.g387171 No alias nucleotide-rhamnose synthase/epimerase-reductase 0.01 Orthogroups_2024-Update
Glyma.12G234300 No alias rhamnose biosynthesis 1 0.02 Orthogroups_2024-Update
HORVU4Hr1G059120.2 No alias UDP-L-rhamnose synthase *(RHM) 0.02 Orthogroups_2024-Update
Pp1s194_128V6 No alias rhamnose synthase 0.02 Orthogroups_2024-Update
Pp1s263_3V6 No alias rhamnose synthase 0.02 Orthogroups_2024-Update
Pp1s88_1V6 No alias rhamnose synthase 0.02 Orthogroups_2024-Update
Seita.9G451100.1 No alias UDP-L-rhamnose synthase *(RHM) 0.03 Orthogroups_2024-Update
Solyc07g062130 No alias Trifunctional UDP-glucose... 0.03 Orthogroups_2024-Update
Solyc08g080140 No alias 3,5-epimerase/4-reductase (AHRD V3.3 *** I3SMF8_MEDTR) 0.02 Orthogroups_2024-Update
Sopen07g030400 No alias NAD dependent epimerase/dehydratase family 0.01 Orthogroups_2024-Update
evm.model.tig00021464.17 No alias (at1g53500 : 393.0) encodes a putative NDP-L-rhamnose... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Predicted GO
MF GO:0003824 catalytic activity IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
MF GO:0009055 electron transfer activity IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Predicted GO
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
CC GO:0030117 membrane coat IEP Predicted GO
CC GO:0030118 clathrin coat IEP Predicted GO
CC GO:0030120 vesicle coat IEP Predicted GO
CC GO:0030125 clathrin vesicle coat IEP Predicted GO
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Predicted GO
CC GO:0030132 clathrin coat of coated pit IEP Predicted GO
MF GO:0030246 carbohydrate binding IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
CC GO:0044431 Golgi apparatus part IEP Predicted GO
CC GO:0044433 cytoplasmic vesicle part IEP Predicted GO
CC GO:0044459 plasma membrane part IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
MF GO:0051287 NAD binding IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
BP GO:0055114 oxidation-reduction process IEP Predicted GO
CC GO:0098797 plasma membrane protein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR016040 NAD(P)-bd_dom 11 316
IPR029903 RmlD-like-bd 396 569
No external refs found!