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  5. Kfl00417_0080

Kfl00417_0080 (kfl00417_0080_v1.1)


Aliases : kfl00417_0080_v1.1

Description : (at5g61140 : 2262.0) Encodes a predicted protein with 30% identity with MER3/RCK.; U5 small nuclear ribonucleoprotein helicase; FUNCTIONS IN: in 6 functions; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Sec63 domain (InterPro:IPR004179), Sec63 domain, subgroup (InterPro:IPR018127), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: U5 small nuclear ribonucleoprotein helicase, putative (TAIR:AT1G20960.2). & (reliability: 4524.0) & (original description: no original description)


Gene families : OG_42_0000868 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000868_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Klebsormidium release: Kfl00417_0080
Cluster HCCA clusters: Cluster_101

Target Alias Description ECC score Gene Family Method Actions
178863 No alias U5 small nuclear ribonucleoprotein helicase 0.03 Orthogroups_2024-Update
410613 No alias U5 small nuclear ribonucleoprotein helicase 0.01 Orthogroups_2024-Update
A4A49_16477 No alias dexh-box atp-dependent rna helicase dexh12 0.01 Orthogroups_2024-Update
At5g61140 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.02 Orthogroups_2024-Update
Bradi1g70057 No alias U5 small nuclear ribonucleoprotein helicase 0.05 Orthogroups_2024-Update
Bradi3g00980 No alias U5 small nuclear ribonucleoprotein helicase, putative 0.01 Orthogroups_2024-Update
LOC_Os03g11470 No alias DEAD/DEAH box helicase domain containing protein, expressed 0.02 Orthogroups_2024-Update
Pp1s84_129V6 No alias novel rna helicase familyprotein 0.01 Orthogroups_2024-Update
Seita.1G005500.1 No alias RNA helicase *(Brr2) 0.02 Orthogroups_2024-Update
Sobic.004G005400.1 No alias RNA helicase *(Brr2) 0.02 Orthogroups_2024-Update
Solyc06g069480 No alias U5 small nuclear ribonucleoprotein helicase (AHRD V3.3... 0.07 Orthogroups_2024-Update
Sopen06g033490 No alias Sec63 Brl domain 0.02 Orthogroups_2024-Update
evm.model.contig_4469.3 No alias (at5g61140 : 1009.0) Encodes a predicted protein with... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000726 non-recombinational repair IEP Predicted GO
MF GO:0004003 ATP-dependent DNA helicase activity IEP Predicted GO
MF GO:0004386 helicase activity IEP Predicted GO
MF GO:0004559 alpha-mannosidase activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
BP GO:0006013 mannose metabolic process IEP Predicted GO
BP GO:0006302 double-strand break repair IEP Predicted GO
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP Predicted GO
BP GO:0006644 phospholipid metabolic process IEP Predicted GO
BP GO:0006650 glycerophospholipid metabolic process IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Predicted GO
BP GO:0006904 vesicle docking involved in exocytosis IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
MF GO:0015923 mannosidase activity IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
BP GO:0022406 membrane docking IEP Predicted GO
CC GO:0030117 membrane coat IEP Predicted GO
CC GO:0030119 AP-type membrane coat adaptor complex IEP Predicted GO
CC GO:0030120 vesicle coat IEP Predicted GO
CC GO:0030127 COPII vesicle coat IEP Predicted GO
CC GO:0030131 clathrin adaptor complex IEP Predicted GO
MF GO:0032947 protein-containing complex scaffold activity IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
MF GO:0043015 gamma-tubulin binding IEP Predicted GO
BP GO:0043248 proteasome assembly IEP Predicted GO
BP GO:0044255 cellular lipid metabolic process IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0046486 glycerolipid metabolic process IEP Predicted GO
BP GO:0046488 phosphatidylinositol metabolic process IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
BP GO:0048278 vesicle docking IEP Predicted GO
BP GO:0051640 organelle localization IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
CC GO:0070531 BRCA1-A complex IEP Predicted GO
CC GO:0070552 BRISC complex IEP Predicted GO
BP GO:0140029 exocytic process IEP Predicted GO
BP GO:0140056 organelle localization by membrane tethering IEP Predicted GO
InterPro domains Description Start Stop
IPR004179 Sec63-dom 1006 1311
IPR004179 Sec63-dom 1837 2154
IPR011545 DEAD/DEAH_box_helicase_dom 506 681
IPR011545 DEAD/DEAH_box_helicase_dom 1355 1519
IPR001650 Helicase_C 739 881
IPR001650 Helicase_C 1631 1718
No external refs found!