1. Home
  2. Species
  3. Klebsormidium nitens
  4. Sequence
  5. Kfl00417_0090

Kfl00417_0090 (kfl00417_0090_v1.1)


Aliases : kfl00417_0090_v1.1

Description : (at5g10980 : 254.0) Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleosome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT4G40030.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q71h73|h33_vitvi : 253.0) Histone H3.3 - Vitis vinifera (Grape) & (reliability: 508.0) & (original description: no original description)


Gene families : OG_42_0000090 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000090_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Klebsormidium release: Kfl00417_0090
Cluster HCCA clusters: Cluster_36

Target Alias Description ECC score Gene Family Method Actions
A4A49_35192 No alias histone h3.3 0.01 Orthogroups_2024-Update
At4g40040 No alias Histone H3.3 [Source:UniProtKB/Swiss-Prot;Acc:P59169] 0.01 Orthogroups_2024-Update
Bradi1g49990 No alias Histone superfamily protein 0.01 Orthogroups_2024-Update
Bradi1g49997 No alias Histone superfamily protein 0.01 Orthogroups_2024-Update
GRMZM2G078314 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G130079 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G171387 No alias Histone superfamily protein 0.01 Orthogroups_2024-Update
GRMZM2G179005 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G418258 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Glyma.16G026300 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Glyma.17G255602 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
HORVU4Hr1G073150.1 No alias histone *(H3) 0.01 Orthogroups_2024-Update
HORVU6Hr1G011520.1 No alias histone *(H3) 0.01 Orthogroups_2024-Update
HORVU7Hr1G012820.2 No alias histone *(H3) 0.01 Orthogroups_2024-Update
HORVU7Hr1G033030.1 No alias histone *(H3) 0.01 Orthogroups_2024-Update
MA_210354g0010 No alias (at5g65360 : 227.0) Histone superfamily protein;... 0.03 Orthogroups_2024-Update
Potri.002G026800 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Potri.002G100200 No alias Histone superfamily protein 0.01 Orthogroups_2024-Update
Solyc01g074000 No alias Histone H3 (AHRD V3.3 *** A0A0E0P928_ORYRU) 0.01 Orthogroups_2024-Update
Solyc01g079110 No alias Histone H3 (AHRD V3.3 *** A0A0V0H170_SOLCH) 0.01 Orthogroups_2024-Update
Solyc01g080600 No alias Histone H3 (AHRD V3.3 *** A0A068VC55_COFCA) 0.01 Orthogroups_2024-Update
Solyc01g086820 No alias Histone H3 (AHRD V3.3 *** A0A068VC55_COFCA) 0.01 Orthogroups_2024-Update
Solyc02g077480 No alias Histone H3 (AHRD V3.3 *** A0A068VC55_COFCA) 0.01 Orthogroups_2024-Update
Solyc04g074580 No alias Histone H3 (AHRD V3.3 *** K7VSQ3_MAIZE) 0.01 Orthogroups_2024-Update
Solyc10g008910 No alias Histone H3 (AHRD V3.3 *** A0A068VC55_COFCA) 0.01 Orthogroups_2024-Update
Solyc12g056540 No alias Histone H3 (AHRD V3.3 *** K4DFY5_SOLLC) 0.01 Orthogroups_2024-Update
Sopen01g033540 No alias Core histone H2A/H2B/H3/H4 0.03 Orthogroups_2024-Update
Sopen10g004700 No alias Core histone H2A/H2B/H3/H4 0.03 Orthogroups_2024-Update
Sopen12g029140 No alias Core histone H2A/H2B/H3/H4 0.03 Orthogroups_2024-Update
evm.model.contig_2255.2 No alias (at5g10980 : 218.0) Histone superfamily protein;... 0.01 Orthogroups_2024-Update
evm.model.tig00020876.4 No alias (at5g10980 : 152.0) Histone superfamily protein;... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA InterProScan predictions
MF GO:0003677 DNA binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003774 motor activity IEP Predicted GO
MF GO:0003777 microtubule motor activity IEP Predicted GO
MF GO:0004097 catechol oxidase activity IEP Predicted GO
CC GO:0005875 microtubule associated complex IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006928 movement of cell or subcellular component IEP Predicted GO
BP GO:0007017 microtubule-based process IEP Predicted GO
BP GO:0007018 microtubule-based movement IEP Predicted GO
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Predicted GO
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
CC GO:0030286 dynein complex IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
CC GO:0044430 cytoskeletal part IEP Predicted GO
BP GO:0065003 protein-containing complex assembly IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 1 132
No external refs found!