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  5. Solyc06g075330

Solyc06g075330


Description : LOB domain-containing protein, putative (AHRD V3.3 *** B9SK21_RICCO)


Gene families : OG_42_0000073 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000073_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc06g075330
Cluster HCCA clusters: Cluster_240

Target Alias Description ECC score Gene Family Method Actions
A4A49_21104 No alias lob domain-containing protein 1 0.03 Orthogroups_2024-Update
Brara.B01673.1 No alias AS2/LOB-type transcription factor 0.03 Orthogroups_2024-Update
Glyma.17G086300 No alias Lateral organ boundaries (LOB) domain family protein 0.02 Orthogroups_2024-Update
MA_361391g0010 No alias (at1g07900 : 123.0) LOB domain-containing protein 1... 0.02 Orthogroups_2024-Update
MA_85817g0010 No alias (at1g07900 : 152.0) LOB domain-containing protein 1... 0.02 Orthogroups_2024-Update
PSME_00039447-RA No alias (at2g28500 : 163.0) LOB domain-containing protein 11... 0.03 Orthogroups_2024-Update
Solyc06g050430 No alias LOB domain-containing protein, putative (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
Solyc06g062630 No alias LOB domain-containing protein, putative (AHRD V3.3 *-*... 0.04 Orthogroups_2024-Update
Solyc06g071660 No alias LOB domain-containing protein, putative (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
Solyc11g008830 No alias Asymmetric leaves 2 (AHRD V3.3 *** A7L4B2_CARPA) 0.04 Orthogroups_2024-Update
Sopen11g004610 No alias Protein of unknown function DUF260 0.04 Orthogroups_2024-Update
Sopen11g030110 No alias Protein of unknown function DUF260 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000075 cell cycle checkpoint IEP Predicted GO
BP GO:0000077 DNA damage checkpoint IEP Predicted GO
MF GO:0003684 damaged DNA binding IEP Predicted GO
MF GO:0004143 diacylglycerol kinase activity IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006281 DNA repair IEP Predicted GO
BP GO:0006950 response to stress IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
BP GO:0007186 G protein-coupled receptor signaling pathway IEP Predicted GO
BP GO:0007205 protein kinase C-activating G protein-coupled receptor signaling pathway IEP Predicted GO
MF GO:0015298 solute:cation antiporter activity IEP Predicted GO
MF GO:0015299 solute:proton antiporter activity IEP Predicted GO
CC GO:0030896 checkpoint clamp complex IEP Predicted GO
BP GO:0031570 DNA integrity checkpoint IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
BP GO:0042592 homeostatic process IEP Predicted GO
CC GO:0044454 nuclear chromosome part IEP Predicted GO
BP GO:0045786 negative regulation of cell cycle IEP Predicted GO
BP GO:0048523 negative regulation of cellular process IEP Predicted GO
BP GO:0050896 response to stimulus IEP Predicted GO
BP GO:0051716 cellular response to stimulus IEP Predicted GO
BP GO:0051726 regulation of cell cycle IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
BP GO:0065008 regulation of biological quality IEP Predicted GO
InterPro domains Description Start Stop
IPR004883 LOB 1 38
No external refs found!