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  5. Solyc01g006850

Solyc01g006850


Description : Pentatricopeptide repeat-containing family protein (AHRD V3.3 *** B9H9M3_POPTR)


Gene families : OG_42_0009808 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0009808_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc01g006850
Cluster HCCA clusters: Cluster_275

Target Alias Description ECC score Gene Family Method Actions
At5g06400 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Orthogroups_2024-Update
Potri.006G200800 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Sobic.004G256900.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sopen01g002840 No alias PPR repeat family 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Predicted GO
CC GO:0000152 nuclear ubiquitin ligase complex IEP Predicted GO
MF GO:0000287 magnesium ion binding IEP Predicted GO
CC GO:0000786 nucleosome IEP Predicted GO
CC GO:0005680 anaphase-promoting complex IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0006743 ubiquinone metabolic process IEP Predicted GO
BP GO:0006744 ubiquinone biosynthetic process IEP Predicted GO
MF GO:0008192 RNA guanylyltransferase activity IEP Predicted GO
MF GO:0008193 tRNA guanylyltransferase activity IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0010181 FMN binding IEP Predicted GO
BP GO:0016458 gene silencing IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
BP GO:0019751 polyol metabolic process IEP Predicted GO
BP GO:0031047 gene silencing by RNA IEP Predicted GO
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
BP GO:0032957 inositol trisphosphate metabolic process IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
BP GO:0042180 cellular ketone metabolic process IEP Predicted GO
BP GO:0042181 ketone biosynthetic process IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
BP GO:0043647 inositol phosphate metabolic process IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0047325 inositol tetrakisphosphate 1-kinase activity IEP Predicted GO
MF GO:0051765 inositol tetrakisphosphate kinase activity IEP Predicted GO
MF GO:0051766 inositol trisphosphate kinase activity IEP Predicted GO
MF GO:0052725 inositol-1,3,4-trisphosphate 6-kinase activity IEP Predicted GO
MF GO:0052726 inositol-1,3,4-trisphosphate 5-kinase activity IEP Predicted GO
MF GO:0070568 guanylyltransferase activity IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
BP GO:1901661 quinone metabolic process IEP Predicted GO
BP GO:1901663 quinone biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 537 564
IPR002885 Pentatricopeptide_repeat 1028 1056
IPR002885 Pentatricopeptide_repeat 396 424
IPR002885 Pentatricopeptide_repeat 887 911
IPR002885 Pentatricopeptide_repeat 256 285
IPR002885 Pentatricopeptide_repeat 922 951
IPR002885 Pentatricopeptide_repeat 746 775
IPR002885 Pentatricopeptide_repeat 431 459
IPR002885 Pentatricopeptide_repeat 464 508
IPR002885 Pentatricopeptide_repeat 779 826
IPR002885 Pentatricopeptide_repeat 953 1001
IPR002885 Pentatricopeptide_repeat 287 336
No external refs found!