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  5. Solyc01g073970

Solyc01g073970


Description : Histone H3 (AHRD V3.3 *** A0A068VC55_COFCA)


Gene families : OG_42_0000090 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000090_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc01g073970
Cluster HCCA clusters: Cluster_293

Target Alias Description ECC score Gene Family Method Actions
Glyma.16G026300 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
HORVU1Hr1G020050.3 No alias histone *(H3) 0.03 Orthogroups_2024-Update
HORVU1Hr1G020070.2 No alias histone *(H3) 0.03 Orthogroups_2024-Update
HORVU1Hr1G074340.1 No alias histone *(H3) 0.03 Orthogroups_2024-Update
MA_10432805g0020 No alias (at5g65360 : 226.0) Histone superfamily protein;... 0.03 Orthogroups_2024-Update
MA_17527g0010 No alias (at5g65360 : 228.0) Histone superfamily protein;... 0.03 Orthogroups_2024-Update
PSME_00001054-RA No alias (at5g10980 : 114.0) Histone superfamily protein;... 0.03 Orthogroups_2024-Update
Pp1s164_20V6 No alias histone h3 0.03 Orthogroups_2024-Update
Seita.3G198000.1 No alias histone H3 variant *(CENH3) 0.05 Orthogroups_2024-Update
Sopen01g033820 No alias Core histone H2A/H2B/H3/H4 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
CC GO:0005681 spliceosomal complex IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0006633 fatty acid biosynthetic process IEP Predicted GO
BP GO:0007275 multicellular organism development IEP Predicted GO
MF GO:0008375 acetylglucosaminyltransferase activity IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
BP GO:0032501 multicellular organismal process IEP Predicted GO
BP GO:0032502 developmental process IEP Predicted GO
MF GO:0045735 nutrient reservoir activity IEP Predicted GO
BP GO:0048856 anatomical structure development IEP Predicted GO
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 1 132
No external refs found!