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  5. Kfl00502_0080

Kfl00502_0080 (kfl00502_0080_v1.1)


Aliases : kfl00502_0080_v1.1

Description : (at4g18465 : 521.0) RNA helicase family protein; FUNCTIONS IN: RNA helicase activity, helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Domain of unknown function DUF1605 (InterPro:IPR011709), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: RNA helicase family protein (TAIR:AT1G32490.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 1042.0) & (original description: no original description)


Gene families : OG_42_0000210 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000210_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Klebsormidium release: Kfl00502_0080
Cluster HCCA clusters: Cluster_126

Target Alias Description ECC score Gene Family Method Actions
At5g13010 No alias Pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.02 Orthogroups_2024-Update
Bradi1g61220 No alias RNA helicase family protein 0.01 Orthogroups_2024-Update
Bradi3g59870 No alias RNA helicase family protein 0.02 Orthogroups_2024-Update
Bradi4g19990 No alias RNA helicase family protein 0.02 Orthogroups_2024-Update
Glyma.01G142700 No alias RNA helicase family protein 0.01 Orthogroups_2024-Update
Glyma.05G146100 No alias RNA helicase family protein 0.02 Orthogroups_2024-Update
Glyma.19G218200 No alias RNA helicase family protein 0.02 Orthogroups_2024-Update
LOC_Os03g19960 No alias ATP-dependent RNA helicase, putative, expressed 0.02 Orthogroups_2024-Update
Seita.1G136100.1 No alias Unknown function 0.01 Orthogroups_2024-Update
Seita.2G326100.1 No alias RNA helicase *(Prp16) 0.02 Orthogroups_2024-Update
Seita.8G109400.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc05g015040 No alias RNA helicase DEAH-box 15 0.01 Orthogroups_2024-Update
Solyc09g097820 No alias RNA helicase family protein 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0004386 helicase activity IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000278 mitotic cell cycle IEP Predicted GO
CC GO:0000775 chromosome, centromeric region IEP Predicted GO
MF GO:0003909 DNA ligase activity IEP Predicted GO
MF GO:0003910 DNA ligase (ATP) activity IEP Predicted GO
MF GO:0004594 pantothenate kinase activity IEP Predicted GO
MF GO:0004649 poly(ADP-ribose) glycohydrolase activity IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
MF GO:0005543 phospholipid binding IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006281 DNA repair IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0006950 response to stress IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
BP GO:0006996 organelle organization IEP Predicted GO
BP GO:0007049 cell cycle IEP Predicted GO
BP GO:0007062 sister chromatid cohesion IEP Predicted GO
BP GO:0007064 mitotic sister chromatid cohesion IEP Predicted GO
MF GO:0008289 lipid binding IEP Predicted GO
MF GO:0008963 phospho-N-acetylmuramoyl-pentapeptide-transferase activity IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0015936 coenzyme A metabolic process IEP Predicted GO
BP GO:0015937 coenzyme A biosynthetic process IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Predicted GO
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Predicted GO
BP GO:0022402 cell cycle process IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Predicted GO
BP GO:0033866 nucleoside bisphosphate biosynthetic process IEP Predicted GO
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Predicted GO
BP GO:0034030 ribonucleoside bisphosphate biosynthetic process IEP Predicted GO
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Predicted GO
BP GO:0034033 purine nucleoside bisphosphate biosynthetic process IEP Predicted GO
MF GO:0035091 phosphatidylinositol binding IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
MF GO:0043015 gamma-tubulin binding IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
BP GO:0051716 cellular response to stimulus IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
CC GO:0098687 chromosomal region IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
MF GO:0140097 catalytic activity, acting on DNA IEP Predicted GO
BP GO:1903047 mitotic cell cycle process IEP Predicted GO
InterPro domains Description Start Stop
IPR007502 Helicase-assoc_dom 454 543
IPR001650 Helicase_C 263 391
IPR011545 DEAD/DEAH_box_helicase_dom 60 206
No external refs found!