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  5. Kfl00517_0040

Kfl00517_0040 (kfl00517_0040_v1.1)


Aliases : kfl00517_0040_v1.1

Description : (at3g54890 : 116.0) Encodes a component of the light harvesting complex associated with photosystem I.; photosystem I light harvesting complex gene 1 (LHCA1); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to blue light, response to red light, photosynthesis, light harvesting in photosystem I, response to far red light, photosynthesis; LOCATED IN: light-harvesting complex, chloroplast thylakoid membrane, chloroplast, plastoglobule, membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: light harvesting complex photosystem II (TAIR:AT2G40100.1); Has 2134 Blast hits to 2063 proteins in 214 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 1854; Viruses - 0; Other Eukaryotes - 277 (source: NCBI BLink). & (p20866|cb2_phypa : 113.0) Chlorophyll a-b binding protein, chloroplast precursor (LHCII type I CAB) (LHCP) - Physcomitrella patens (Moss) & (reliability: 232.0) & (original description: no original description)


Gene families : OG_42_0000070 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000070_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Klebsormidium release: Kfl00517_0040
Cluster HCCA clusters: Cluster_88

Target Alias Description ECC score Gene Family Method Actions
A4A49_14365 No alias chlorophyll a-b binding protein 21, chloroplastic 0.02 Orthogroups_2024-Update
A4A49_24464 No alias chlorophyll a-b binding protein 36, chloroplastic 0.02 Orthogroups_2024-Update
A4A49_25385 No alias chlorophyll a-b binding protein cp26, chloroplastic 0.02 Orthogroups_2024-Update
A4A49_33198 No alias chlorophyll a-b binding protein p4, chloroplastic 0.02 Orthogroups_2024-Update
At1g19150 No alias Photosystem I chlorophyll a/b-binding protein 6,... 0.03 Orthogroups_2024-Update
At1g29910 No alias Chlorophyll a-b binding protein 3, chloroplastic... 0.01 Orthogroups_2024-Update
At3g47470 No alias Chlorophyll a-b binding protein, chloroplastic... 0.01 Orthogroups_2024-Update
At3g54890 No alias Chlorophyll a-b binding protein, chloroplastic... 0.01 Orthogroups_2024-Update
At5g54270 No alias Chlorophyll a-b binding protein 3, chloroplastic... 0.02 Orthogroups_2024-Update
Bradi1g12130 No alias chlorophyll A/B binding protein 1 0.02 Orthogroups_2024-Update
Bradi4g30060 No alias light-harvesting chlorophyll-protein complex I subunit A4 0.02 Orthogroups_2024-Update
Brara.B01393.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.B03307.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.01 Orthogroups_2024-Update
Brara.C01741.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.02 Orthogroups_2024-Update
Brara.C02638.1 No alias component *(LHCb5) of LHC-II complex 0.01 Orthogroups_2024-Update
Brara.D00100.1 No alias component *(LHCa2) of LHC-I complex 0.02 Orthogroups_2024-Update
Brara.E00982.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.02 Orthogroups_2024-Update
Brara.F01756.1 No alias component *(LHCa4) of LHC-I complex 0.02 Orthogroups_2024-Update
Brara.F03187.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.03 Orthogroups_2024-Update
Brara.G01647.1 No alias component *(LHCa1) of LHC-I complex 0.02 Orthogroups_2024-Update
Brara.G01921.1 No alias component *(LHCa2) of LHC-I complex 0.02 Orthogroups_2024-Update
Brara.H01921.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.03 Orthogroups_2024-Update
Brara.H02384.1 No alias linker protein *(LHCa6) between PS-I complex and NDH complex 0.02 Orthogroups_2024-Update
Brara.I00297.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.02 Orthogroups_2024-Update
Brara.I02349.1 No alias component *(LHCb5) of LHC-II complex 0.02 Orthogroups_2024-Update
Brara.I02856.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.04 Orthogroups_2024-Update
Brara.I02857.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.03 Orthogroups_2024-Update
Cre03.g156900 No alias photosystem II light harvesting complex gene 2.2 0.01 Orthogroups_2024-Update
Cre06.g272650 No alias photosystem I light harvesting complex gene 5 0.01 Orthogroups_2024-Update
Cre06.g283950 No alias photosystem II light harvesting complex gene 2.1 0.01 Orthogroups_2024-Update
Cre07.g344950 No alias photosystem I light harvesting complex gene 5 0.01 Orthogroups_2024-Update
Cre10.g425900 No alias light-harvesting chlorophyll-protein complex I subunit A4 0.01 Orthogroups_2024-Update
Cre12.g508750 No alias photosystem I light harvesting complex gene 6 0.01 Orthogroups_2024-Update
Cre12.g548400 No alias photosystem II light harvesting complex gene 2.2 0.01 Orthogroups_2024-Update
Cre16.g673650 No alias light harvesting complex of photosystem II 5 0.01 Orthogroups_2024-Update
Cre16.g687900 No alias photosystem I light harvesting complex gene 5 0.01 Orthogroups_2024-Update
GRMZM2G072280 No alias photosystem I light harvesting complex gene 2 0.02 Orthogroups_2024-Update
GRMZM2G160268 No alias light-harvesting chlorophyll-protein complex I subunit A4 0.02 Orthogroups_2024-Update
Glyma.02G064700 No alias photosystem I light harvesting complex gene 1 0.01 Orthogroups_2024-Update
Glyma.02G305400 No alias photosystem II light harvesting complex gene 2.1 0.02 Orthogroups_2024-Update
Glyma.03G262300 No alias photosystem I light harvesting complex gene 2 0.03 Orthogroups_2024-Update
Glyma.06G194900 No alias light-harvesting chlorophyll-protein complex I subunit A4 0.01 Orthogroups_2024-Update
Glyma.09G154700 No alias light harvesting complex of photosystem II 5 0.02 Orthogroups_2024-Update
Glyma.12G219300 No alias light-harvesting chlorophyll B-binding protein 3 0.02 Orthogroups_2024-Update
Glyma.13G282000 No alias light-harvesting chlorophyll B-binding protein 3 0.02 Orthogroups_2024-Update
Glyma.14G008000 No alias photosystem II light harvesting complex gene 2.1 0.02 Orthogroups_2024-Update
Glyma.16G016100 No alias photosystem I light harvesting complex gene 2 0.02 Orthogroups_2024-Update
Glyma.16G145800 No alias photosystem I light harvesting complex gene 1 0.01 Orthogroups_2024-Update
HORVU2Hr1G036960.9 No alias component *(LHCa2) of LHC-I complex 0.02 Orthogroups_2024-Update
HORVU2Hr1G040780.4 No alias component *(LHCb1/2/3) of LHC-II complex 0.01 Orthogroups_2024-Update
HORVU5Hr1G066280.1 No alias component *(LHCa4) of LHC-I complex 0.01 Orthogroups_2024-Update
HORVU5Hr1G087250.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.01 Orthogroups_2024-Update
HORVU5Hr1G124160.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.01 Orthogroups_2024-Update
LOC_Os06g21590 No alias chlorophyll A-B binding protein, putative, expressed 0.01 Orthogroups_2024-Update
LOC_Os08g33820 No alias chlorophyll A-B binding protein, putative, expressed 0.01 Orthogroups_2024-Update
LOC_Os09g12540 No alias chlorophyll A-B binding protein, putative, expressed 0.01 Orthogroups_2024-Update
MA_131587g0010 No alias (p15194|cb2b_pinsy : 453.0) Chlorophyll a-b binding... 0.02 Orthogroups_2024-Update
MA_176279g0010 No alias (at4g10340 : 387.0) photosystem II encoding the... 0.02 Orthogroups_2024-Update
MA_267089g0010 No alias (p10049|cb21_pinth : 242.0) Chlorophyll a-b binding... 0.01 Orthogroups_2024-Update
Mp2g15420.1 No alias component LHCa1 of LHC-I complex 0.02 Orthogroups_2024-Update
Mp3g07840.1 No alias component LHCa4 of LHC-I complex 0.01 Orthogroups_2024-Update
Mp7g05880.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 Orthogroups_2024-Update
Mp7g05980.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 Orthogroups_2024-Update
Mp7g06710.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 Orthogroups_2024-Update
Mp7g06730.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 Orthogroups_2024-Update
Mp7g06760.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 Orthogroups_2024-Update
Mp7g08940.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 Orthogroups_2024-Update
Mp8g12010.1 No alias component LHCq of LHC-II complex 0.01 Orthogroups_2024-Update
PSME_00000370-RA No alias (at1g76570 : 223.0) Chlorophyll A-B binding family... 0.02 Orthogroups_2024-Update
PSME_00054524-RA No alias (p10049|cb21_pinth : 468.0) Chlorophyll a-b binding... 0.02 Orthogroups_2024-Update
Potri.002G221400 No alias photosystem II light harvesting complex gene 2.2 0.02 Orthogroups_2024-Update
Potri.005G258600 No alias Chlorophyll A-B binding family protein 0.02 Orthogroups_2024-Update
Potri.019G063100 No alias light harvesting complex of photosystem II 5 0.02 Orthogroups_2024-Update
Pp1s12_390V6 No alias chlorophyll a b binding 0.03 Orthogroups_2024-Update
Pp1s13_200V6 No alias chlorophyll a b binding 0.02 Orthogroups_2024-Update
Pp1s158_109V6 No alias chlorophyll a-b binding protein 6a 0.03 Orthogroups_2024-Update
Pp1s177_13V6 No alias chlorophyll a b binding 0.03 Orthogroups_2024-Update
Pp1s241_66V6 No alias chlorophyll a-b binding protein 0.02 Orthogroups_2024-Update
Pp1s247_7V6 No alias chlorophyll a-b binding protein 6a 0.03 Orthogroups_2024-Update
Pp1s254_3V6 No alias light-harvesting complex ii protein lhcb3 0.03 Orthogroups_2024-Update
Pp1s256_10V6 No alias chlorophyll a b binding 0.03 Orthogroups_2024-Update
Pp1s330_37V6 No alias chlorophyll a-b binding protein 0.03 Orthogroups_2024-Update
Pp1s52_157V6 No alias light-harvesting complex ii protein lhcb2 0.04 Orthogroups_2024-Update
Pp1s6_312V6 No alias light-harvesting complex ii protein lhcb5 0.01 Orthogroups_2024-Update
Seita.2G299200.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.01 Orthogroups_2024-Update
Seita.2G352900.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.02 Orthogroups_2024-Update
Seita.2G366600.1 No alias component *(LHCa2) of LHC-I complex 0.02 Orthogroups_2024-Update
Seita.3G143800.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.02 Orthogroups_2024-Update
Seita.4G139900.1 No alias component *(LHCa1) of LHC-I complex 0.03 Orthogroups_2024-Update
Seita.5G215600.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.02 Orthogroups_2024-Update
Seita.6G158500.1 No alias component *(LHCa4) of LHC-I complex 0.02 Orthogroups_2024-Update
Sobic.002G159100.1 No alias component *(LHCq) of LHC-II complex 0.02 Orthogroups_2024-Update
Sobic.002G352100.1 No alias component *(LHCa2) of LHC-I complex 0.02 Orthogroups_2024-Update
Sobic.003G209900.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.01 Orthogroups_2024-Update
Sobic.004G308700.1 No alias linker protein *(LHCa5) between PS-I complex and NDH complex 0.02 Orthogroups_2024-Update
Sobic.005G087000.1 No alias component *(LHCb5) of LHC-II complex 0.01 Orthogroups_2024-Update
Sobic.007G136900.1 No alias component *(LHCa4) of LHC-I complex 0.01 Orthogroups_2024-Update
Sobic.009G234600.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.01 Orthogroups_2024-Update
Solyc02g070940 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.01 Orthogroups_2024-Update
Solyc02g070970 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.01 Orthogroups_2024-Update
Solyc02g070980 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.01 Orthogroups_2024-Update
Solyc02g070990 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.02 Orthogroups_2024-Update
Solyc02g071000 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.01 Orthogroups_2024-Update
Solyc02g071010 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.01 Orthogroups_2024-Update
Solyc02g071030 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.01 Orthogroups_2024-Update
Solyc03g115900 No alias chlorophyll a-b binding protein CAB11 0.02 Orthogroups_2024-Update
Solyc05g056050 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.01 Orthogroups_2024-Update
Solyc06g069730 No alias chlorophyll a-b binding protein Cab12 0.02 Orthogroups_2024-Update
Solyc07g047850 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.01 Orthogroups_2024-Update
Solyc07g063600 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.01 Orthogroups_2024-Update
Solyc08g067320 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.01 Orthogroups_2024-Update
Solyc08g067330 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.01 Orthogroups_2024-Update
Solyc10g006230 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.02 Orthogroups_2024-Update
Solyc12g011450 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.02 Orthogroups_2024-Update
Sopen02g020050 No alias Chlorophyll A-B binding protein 0.01 Orthogroups_2024-Update
Sopen03g034880 No alias Chlorophyll A-B binding protein 0.01 Orthogroups_2024-Update
Sopen06g022840 No alias Chlorophyll A-B binding protein 0.02 Orthogroups_2024-Update
Sopen06g027030 No alias Chlorophyll A-B binding protein 0.01 Orthogroups_2024-Update
Sopen08g021280 No alias Chlorophyll A-B binding protein 0.01 Orthogroups_2024-Update
Sopen12g004150 No alias Chlorophyll A-B binding protein 0.01 Orthogroups_2024-Update
evm.model.contig_2142.1 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update
evm.model.contig_2493.3 No alias (p27523|cb23_horvu : 90.9) Chlorophyll a-b binding... 0.02 Orthogroups_2024-Update
evm.model.contig_3421.1 No alias (at3g54890 : 82.4) Encodes a component of the light... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Predicted GO
MF GO:0003849 3-deoxy-7-phosphoheptulonate synthase activity IEP Predicted GO
MF GO:0004418 hydroxymethylbilane synthase activity IEP Predicted GO
MF GO:0004427 inorganic diphosphatase activity IEP Predicted GO
MF GO:0004645 phosphorylase activity IEP Predicted GO
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP Predicted GO
BP GO:0006720 isoprenoid metabolic process IEP Predicted GO
BP GO:0006721 terpenoid metabolic process IEP Predicted GO
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Predicted GO
MF GO:0008184 glycogen phosphorylase activity IEP Predicted GO
BP GO:0008299 isoprenoid biosynthetic process IEP Predicted GO
MF GO:0008565 protein transporter activity IEP Predicted GO
CC GO:0009538 photosystem I reaction center IEP Predicted GO
MF GO:0009678 hydrogen-translocating pyrophosphatase activity IEP Predicted GO
BP GO:0015672 monovalent inorganic cation transport IEP Predicted GO
BP GO:0016114 terpenoid biosynthetic process IEP Predicted GO
BP GO:0016226 iron-sulfur cluster assembly IEP Predicted GO
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Predicted GO
BP GO:0031163 metallo-sulfur cluster assembly IEP Predicted GO
BP GO:0033013 tetrapyrrole metabolic process IEP Predicted GO
BP GO:0033014 tetrapyrrole biosynthetic process IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
BP GO:0044255 cellular lipid metabolic process IEP Predicted GO
MF GO:0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity IEP Predicted GO
BP GO:0046834 lipid phosphorylation IEP Predicted GO
BP GO:0046854 phosphatidylinositol phosphorylation IEP Predicted GO
MF GO:0052592 oxidoreductase activity, acting on CH or CH2 groups, with an iron-sulfur protein as acceptor IEP Predicted GO
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 89 250
No external refs found!