1. Home
  2. Species
  3. Klebsormidium nitens
  4. Sequence
  5. Kfl00551_0060

Kfl00551_0060 (kfl00551_0060_v1.1,...)


Aliases : kfl00551_0060_v1.1, kfl00551_0060_v1.1

Description : (at4g07410 : 324.0) Transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat 2 (InterPro:IPR019782), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT1G27470.1); Has 10654 Blast hits to 6476 proteins in 452 species: Archae - 14; Bacteria - 3757; Metazoa - 2166; Fungi - 2748; Plants - 788; Viruses - 0; Other Eukaryotes - 1181 (source: NCBI BLink). & (reliability: 636.0) & (original description: no original description)


Gene families : OG_42_0004547 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004547_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Klebsormidium release: Kfl00551_0060
Cluster HCCA clusters: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
Bradi1g09530 No alias Transducin family protein / WD-40 repeat family protein 0.05 Orthogroups_2024-Update
Brara.H02048.1 No alias SSU processome assembly factor *(UTP4/PCN) 0.02 Orthogroups_2024-Update
Brara.I03013.1 No alias SSU processome assembly factor *(UTP4/PCN) 0.04 Orthogroups_2024-Update
Cre13.g606850 No alias Transducin family protein / WD-40 repeat family protein 0.07 Orthogroups_2024-Update
Pp1s71_289V6 No alias F28D6.14; transducin family protein / WD-40 repeat... 0.02 Orthogroups_2024-Update
Seita.9G102800.1 No alias SSU processome assembly factor *(UTP4/PCN) 0.02 Orthogroups_2024-Update
Sobic.001G099900.1 No alias SSU processome assembly factor *(UTP4/PCN) 0.04 Orthogroups_2024-Update
Solyc04g077680 No alias Transducin family protein / WD-40 repeat family protein... 0.04 Orthogroups_2024-Update
Sopen04g031320 No alias WD domain, G-beta repeat 0.04 Orthogroups_2024-Update
evm.model.tig00000852.39 No alias (at4g07410 : 188.0) Transducin family protein / WD-40... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003887 DNA-directed DNA polymerase activity IEP Predicted GO
MF GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEP Predicted GO
MF GO:0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0006188 IMP biosynthetic process IEP Predicted GO
BP GO:0006281 DNA repair IEP Predicted GO
BP GO:0006284 base-excision repair IEP Predicted GO
BP GO:0006289 nucleotide-excision repair IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Predicted GO
MF GO:0016840 carbon-nitrogen lyase activity IEP Predicted GO
MF GO:0016842 amidine-lyase activity IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0046040 IMP metabolic process IEP Predicted GO
BP GO:0051382 kinetochore assembly IEP Predicted GO
BP GO:0051383 kinetochore organization IEP Predicted GO
BP GO:0051716 cellular response to stimulus IEP Predicted GO
BP GO:0070925 organelle assembly IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0140097 catalytic activity, acting on DNA IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!