1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc06g076640

Solyc06g076640


Description : Tubulin beta chain (AHRD V3.3 *** M1CZM0_SOLTU)


Gene families : OG_42_0000212 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000212_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc06g076640
Cluster HCCA clusters: Cluster_77

Target Alias Description ECC score Gene Family Method Actions
119313 No alias tubulin beta chain 2 0.03 Orthogroups_2024-Update
Brara.A02439.1 No alias beta-Tubulin component *(TUB) of alpha-beta-Tubulin heterodimer 0.04 Orthogroups_2024-Update
Brara.D01772.1 No alias beta-Tubulin component *(TUB) of alpha-beta-Tubulin heterodimer 0.03 Orthogroups_2024-Update
Brara.E01346.1 No alias beta-Tubulin component *(TUB) of alpha-beta-Tubulin heterodimer 0.03 Orthogroups_2024-Update
Brara.F01786.1 No alias beta-Tubulin component *(TUB) of alpha-beta-Tubulin heterodimer 0.03 Orthogroups_2024-Update
Brara.F01940.1 No alias beta-Tubulin component *(TUB) of alpha-beta-Tubulin heterodimer 0.08 Orthogroups_2024-Update
Cre12.g549550 No alias tubulin beta chain 2 0.03 Orthogroups_2024-Update
GRMZM2G133802 No alias beta-6 tubulin 0.05 Orthogroups_2024-Update
Kfl00215_0170 kfl00215_0170_v1.1 (p04690|tbb_chlre : 825.0) Tubulin beta-1/beta-2 chain -... 0.02 Orthogroups_2024-Update
LOC_Os01g59150 No alias tubulin/FtsZ domain containing protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os02g07060 No alias tubulin/FtsZ domain containing protein, putative, expressed 0.03 Orthogroups_2024-Update
MA_18465g0010 No alias (at5g23860 : 228.0) beta-tubulin, preferentially... 0.03 Orthogroups_2024-Update
MA_219029g0010 No alias (at5g23860 : 422.0) beta-tubulin, preferentially... 0.03 Orthogroups_2024-Update
MA_230579g0010 No alias (q41785|tbb8_maize : 276.0) Tubulin beta-8 chain (Beta-8... 0.03 Orthogroups_2024-Update
Potri.001G106100 No alias tubulin beta 8 0.04 Orthogroups_2024-Update
Potri.009G040200 No alias tubulin beta 8 0.04 Orthogroups_2024-Update
Pp1s22_396V6 No alias tubulin beta 0.02 Orthogroups_2024-Update
Pp1s35_125V6 No alias beta chain 0.02 Orthogroups_2024-Update
Pp1s85_186V6 No alias beta chain 0.02 Orthogroups_2024-Update
Sopen06g033030 No alias Tubulin/FtsZ family, GTPase domain 0.06 Orthogroups_2024-Update
Sopen10g036160 No alias Tubulin/FtsZ family, GTPase domain 0.02 Orthogroups_2024-Update
evm.model.contig_2073.5 No alias (p37832|tbb7_orysa : 682.0) Tubulin beta-7 chain (Beta-7... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0004003 ATP-dependent DNA helicase activity IEP Predicted GO
MF GO:0004518 nuclease activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006260 DNA replication IEP Predicted GO
BP GO:0006270 DNA replication initiation IEP Predicted GO
BP GO:0007059 chromosome segregation IEP Predicted GO
BP GO:0007264 small GTPase mediated signal transduction IEP Predicted GO
MF GO:0008026 ATP-dependent helicase activity IEP Predicted GO
MF GO:0008094 DNA-dependent ATPase activity IEP Predicted GO
MF GO:0043138 3'-5' DNA helicase activity IEP Predicted GO
MF GO:0043140 ATP-dependent 3'-5' DNA helicase activity IEP Predicted GO
BP GO:0051301 cell division IEP Predicted GO
MF GO:0070035 purine NTP-dependent helicase activity IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR003008 Tubulin_FtsZ_GTPase 3 211
IPR018316 Tubulin/FtsZ_2-layer-sand-dom 261 381
No external refs found!