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  5. Solyc06g076930

Solyc06g076930


Description : Pleiotropic drug resistance ABC transporter (AHRD V3.3 *** W0TSU1_ACAMN)


Gene families : OG_42_0000055 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000055_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc06g076930
Cluster HCCA clusters: Cluster_69

Target Alias Description ECC score Gene Family Method Actions
HORVU4Hr1G081040.4 No alias subfamily ABCG transporter 0.04 Orthogroups_2024-Update
PSME_00001267-RA No alias (q5z9s8|pdr12_orysa : 1556.0) Pleiotropic drug... 0.05 Orthogroups_2024-Update
PSME_00002220-RA No alias (q5z9s8|pdr12_orysa : 1203.0) Pleiotropic drug... 0.02 Orthogroups_2024-Update
Potri.001G048700 No alias pleiotropic drug resistance 12 0.02 Orthogroups_2024-Update
Solyc05g053610 No alias Pleiotropic drug resistance ABC transporter (AHRD V3.3... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
CC GO:0016020 membrane IEA InterProScan predictions
MF GO:0016887 ATPase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP Predicted GO
BP GO:0006284 base-excision repair IEP Predicted GO
MF GO:0015298 solute:cation antiporter activity IEP Predicted GO
MF GO:0015299 solute:proton antiporter activity IEP Predicted GO
MF GO:0046983 protein dimerization activity IEP Predicted GO
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like 854 1005
IPR003439 ABC_transporter-like 169 352
IPR013581 PDR_assoc 723 786
IPR029481 ABC_trans_N 81 143
IPR013525 ABC_2_trans 506 718
IPR013525 ABC_2_trans 1151 1363
No external refs found!