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  5. Kfl00603_0070

Kfl00603_0070 (kfl00603_0070_v1.1)


Aliases : kfl00603_0070_v1.1

Description : (at4g05410 : 283.0) Encodes a nucleolar protein with seven WD40-repeats that plays a role in embryo sac development and is critical for the correct positioning of the division plane of zygote and the apical cell lineage in Arabidopsis. YAO may act by modulating nucleolar function, such as rRNA biogenesis, during early embryogenesis and gametogenesis.; YAOZHE (YAO); FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: acceptance of pollen, mitochondrial fission, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleolus, anaphase-promoting complex, small nucleolar ribonucleoprotein complex, CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT4G21130.1); Has 47131 Blast hits to 24802 proteins in 761 species: Archae - 50; Bacteria - 6358; Metazoa - 18156; Fungi - 10195; Plants - 5539; Viruses - 94; Other Eukaryotes - 6739 (source: NCBI BLink). & (q39336|gblp_brana : 84.0) Guanine nucleotide-binding protein subunit beta-like protein - Brassica napus (Rape) & (reliability: 566.0) & (original description: no original description)


Gene families : OG_42_0006077 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006077_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Klebsormidium release: Kfl00603_0070
Cluster HCCA clusters: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
Bradi4g01810 No alias Transducin/WD40 repeat-like superfamily protein 0.02 Orthogroups_2024-Update
Brara.C02749.1 No alias SSU processome assembly factor *(RRP9/YAO1) 0.01 Orthogroups_2024-Update
Cre06.g278175 No alias Transducin/WD40 repeat-like superfamily protein 0.01 Orthogroups_2024-Update
GRMZM2G015005 No alias Transducin/WD40 repeat-like superfamily protein 0.01 Orthogroups_2024-Update
HORVU5Hr1G010440.3 No alias SSU processome assembly factor *(RRP9/YAO1) 0.01 Orthogroups_2024-Update
Mp8g03800.1 No alias SSU processome assembly factor (RRP9/YAO1) 0.02 Orthogroups_2024-Update
Seita.9G158600.1 No alias SSU processome assembly factor *(RRP9/YAO1) 0.01 Orthogroups_2024-Update
Solyc02g069770 No alias WD40-repeat domain-contaning protein 0.01 Orthogroups_2024-Update
Sopen02g018930 No alias WD domain, G-beta repeat 0.01 Orthogroups_2024-Update
evm.model.tig00021179.21 No alias (at4g05410 : 272.0) Encodes a nucleolar protein with... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP Predicted GO
MF GO:0004222 metalloendopeptidase activity IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
MF GO:0008237 metallopeptidase activity IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001680 WD40_repeat 275 306
IPR001680 WD40_repeat 200 223
IPR001680 WD40_repeat 228 265
IPR001680 WD40_repeat 310 346
No external refs found!