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  5. Kfl00636_0040

Kfl00636_0040 (kfl00636_0040_v1.1)


Aliases : kfl00636_0040_v1.1

Description : (at3g42950 : 341.0) Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G19170.1); Has 4385 Blast hits to 4369 proteins in 520 species: Archae - 6; Bacteria - 1604; Metazoa - 14; Fungi - 1181; Plants - 1422; Viruses - 0; Other Eukaryotes - 158 (source: NCBI BLink). & (p48978|pglr_maldo : 89.4) Polygalacturonase precursor (EC 3.2.1.15) (PG) (Pectinase) - Malus domestica (Apple) (Malus sylvestris) & (reliability: 682.0) & (original description: no original description)


Gene families : OG_42_0000259 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000259_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Klebsormidium release: Kfl00636_0040
Cluster HCCA clusters: Cluster_115

Target Alias Description ECC score Gene Family Method Actions
At2g23900 No alias Glycoside hydrolase family 28 protein/polygalacturonase... 0.02 Orthogroups_2024-Update
Bradi1g53430 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi2g43750 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Sobic.005G204700.1 No alias EC_3.2 glycosylase 0.02 Orthogroups_2024-Update
Sopen01g038750 No alias Glycosyl hydrolases family 28 0.03 Orthogroups_2024-Update
Sopen07g021760 No alias Glycosyl hydrolases family 28 0.02 Orthogroups_2024-Update
Sopen08g029810 No alias Glycosyl hydrolases family 28 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
MF GO:0004497 monooxygenase activity IEP Predicted GO
CC GO:0005777 peroxisome IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0007034 vacuolar transport IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
MF GO:0016714 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced pteridine as one donor, and incorporation of one atom of oxygen IEP Predicted GO
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Predicted GO
CC GO:0042579 microbody IEP Predicted GO
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
CC GO:0097525 spliceosomal snRNP complex IEP Predicted GO
CC GO:0097526 spliceosomal tri-snRNP complex IEP Predicted GO
CC GO:0120114 Sm-like protein family complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 301 584
No external refs found!