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  5. Kfl00663_0010

Kfl00663_0010 (kfl00663_0010_v1.1)


Aliases : kfl00663_0010_v1.1

Description : (at1g44910 : 268.0) Binds the carboxyl-terminal domain (CTD) of the largest subunit of RNA polymerase II and functions as a scaffold for RNA processing machineries.; pre-mRNA-processing protein 40A (PRP40A); CONTAINS InterPro DOMAIN/s: FF domain (InterPro:IPR002713), WW/Rsp5/WWP (InterPro:IPR001202); BEST Arabidopsis thaliana protein match is: pre-mRNA-processing protein 40B (TAIR:AT3G19670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 536.0) & (original description: no original description)


Gene families : OG_42_0002795 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002795_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Klebsormidium release: Kfl00663_0010
Cluster HCCA clusters: Cluster_70

Target Alias Description ECC score Gene Family Method Actions
MA_10433850g0010 No alias (at1g44910 : 302.0) Binds the carboxyl-terminal domain... 0.02 Orthogroups_2024-Update
Mp2g00410.1 No alias pre-mRNA-processing protein (PRP40A/B) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
CC GO:0005672 transcription factor TFIIA complex IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006605 protein targeting IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0030688 preribosome, small subunit precursor IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001202 WW_dom 253 278
IPR001202 WW_dom 212 237
IPR002713 FF_domain 402 451
IPR002713 FF_domain 469 519
IPR002713 FF_domain 538 570
IPR002713 FF_domain 611 666
No external refs found!