1. Home
  2. Species
  3. Klebsormidium nitens
  4. Sequence
  5. Kfl00670_0030

Kfl00670_0030 (kfl00670_0030_v1.1)


Aliases : kfl00670_0030_v1.1

Description : (at5g14050 : 411.0) Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: TBP-associated factor 5 (TAIR:AT5G25150.1); Has 6115 Blast hits to 4690 proteins in 400 species: Archae - 26; Bacteria - 2036; Metazoa - 1593; Fungi - 1149; Plants - 369; Viruses - 2; Other Eukaryotes - 940 (source: NCBI BLink). & (reliability: 822.0) & (original description: no original description)


Gene families : OG_42_0004898 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004898_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Klebsormidium release: Kfl00670_0030
Cluster HCCA clusters: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
At5g14050 No alias U3 small nucleolar RNA-associated protein 18 homolog... 0.03 Orthogroups_2024-Update
Brara.J02043.1 No alias SSU processome assembly factor *(UTP18) 0.06 Orthogroups_2024-Update
Cre06.g255950 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.15G059400 No alias Transducin/WD40 repeat-like superfamily protein 0.02 Orthogroups_2024-Update
HORVU5Hr1G105970.3 No alias SSU processome assembly factor *(UTP18) 0.02 Orthogroups_2024-Update
Potri.005G218600 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Orthogroups_2024-Update
Pp1s159_80V6 No alias wd repeat protein 0.04 Orthogroups_2024-Update
Sobic.010G262800.1 No alias SSU processome assembly factor *(UTP18) 0.02 Orthogroups_2024-Update
evm.model.contig_4456.10 No alias (at5g14050 : 251.0) Transducin/WD40 repeat-like... 0.04 Orthogroups_2024-Update
evm.model.tig00020554.145 No alias (at5g14050 : 296.0) Transducin/WD40 repeat-like... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001680 WD40_repeat 211 238
No external refs found!