1. Home
  2. Species
  3. Klebsormidium nitens
  4. Sequence
  5. Kfl00684_0090

Kfl00684_0090 (kfl00684_0090_v1.1)


Aliases : kfl00684_0090_v1.1

Description : (at4g02400 : 189.0) U3 ribonucleoprotein (Utp) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: small-subunit processome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp14 (InterPro:IPR006709); BEST Arabidopsis thaliana protein match is: U3 ribonucleoprotein (Utp) family protein (TAIR:AT5G08600.2); Has 7468 Blast hits to 4514 proteins in 366 species: Archae - 14; Bacteria - 554; Metazoa - 2650; Fungi - 816; Plants - 392; Viruses - 146; Other Eukaryotes - 2896 (source: NCBI BLink). & (reliability: 378.0) & (original description: no original description)


Gene families : OG_42_0004122 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004122_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Klebsormidium release: Kfl00684_0090
Cluster HCCA clusters: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
At4g02400 No alias U3 ribonucleoprotein (Utp) family protein... 0.07 Orthogroups_2024-Update
Bradi1g62850 No alias U3 ribonucleoprotein (Utp) family protein 0.05 Orthogroups_2024-Update
Brara.B02606.1 No alias SSU processome assembly factor *(UTP14) 0.03 Orthogroups_2024-Update
Cre11.g478950 No alias U3 ribonucleoprotein (Utp) family protein 0.06 Orthogroups_2024-Update
Glyma.03G214900 No alias U3 ribonucleoprotein (Utp) family protein 0.02 Orthogroups_2024-Update
HORVU7Hr1G080560.5 No alias SSU processome assembly factor *(UTP14) 0.03 Orthogroups_2024-Update
Seita.9G409300.1 No alias SSU processome assembly factor *(UTP14) 0.02 Orthogroups_2024-Update
Sobic.001G376900.1 No alias SSU processome assembly factor *(UTP14) 0.02 Orthogroups_2024-Update
evm.model.contig_2144.4 No alias (gnl|cdd|68872 : 97.4) no description available &... 0.02 Orthogroups_2024-Update
evm.model.tig00020554.20 No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
evm.model.tig00020554.21 No alias (at4g02400 : 114.0) U3 ribonucleoprotein (Utp) family... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0004386 helicase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
MF GO:0042393 histone binding IEP Predicted GO
MF GO:0070569 uridylyltransferase activity IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!