Solyc01g079180


Description : Pectinesterase (AHRD V3.3 *** K4AXG4_SOLLC)


Gene families : OG_42_0000087 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000087_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc01g079180
Cluster HCCA clusters: Cluster_115

Target Alias Description ECC score Gene Family Method Actions
81583 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
A4A49_28049 No alias putative pectinesterase 8 0.02 Orthogroups_2024-Update
Bradi4g00840 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
MA_10428625g0010 No alias (at3g29090 : 374.0) Encodes an atypical pectin... 0.04 Orthogroups_2024-Update
PSME_00007923-RA No alias (at5g19730 : 228.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
PSME_00020051-RA No alias (at5g19730 : 262.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
PSME_00045931-RA No alias (at5g47500 : 448.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
Pp1s198_26V6 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
Pp1s215_36V6 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
Pp1s55_167V6 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
Seita.9G259700.1 No alias pectin methylesterase 0.03 Orthogroups_2024-Update
Sobic.001G252300.1 No alias pectin methylesterase 0.03 Orthogroups_2024-Update
Sobic.002G138400.1 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
Solyc09g091730 No alias Pectinesterase (AHRD V3.3 *** K4CWJ9_SOLLC) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0005618 cell wall IEA InterProScan predictions
MF GO:0030599 pectinesterase activity IEA InterProScan predictions
BP GO:0042545 cell wall modification IEA InterProScan predictions
Type GO Term Name Evidence Source
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 89 380
No external refs found!