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  5. Solyc06g082900

Solyc06g082900


Description : mediator of RNA polymerase II transcription subunit (AHRD V3.3 *** AT5G19480.4)


Gene families : OG_42_0003016 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003016_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc06g082900
Cluster HCCA clusters: Cluster_132

Target Alias Description ECC score Gene Family Method Actions
Mp5g04790.1 No alias component MED19 of head module of MEDIATOR transcription... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
CC GO:0005681 spliceosomal complex IEP Predicted GO
BP GO:0006284 base-excision repair IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
MF GO:0016840 carbon-nitrogen lyase activity IEP Predicted GO
MF GO:0016843 amine-lyase activity IEP Predicted GO
MF GO:0016844 strictosidine synthase activity IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
BP GO:0050896 response to stimulus IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!