1. Home
  2. Species
  3. Klebsormidium nitens
  4. Sequence
  5. Kfl00774_0060

Kfl00774_0060 (kfl00774_0060_v1.1)


Aliases : kfl00774_0060_v1.1

Description : (at3g61415 : 256.0) SKP1-like 21 (SK21); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: SCF ubiquitin ligase complex; EXPRESSED IN: stem, fruit, root, inflorescence, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333), SKP1 component, POZ (InterPro:IPR016073); BEST Arabidopsis thaliana protein match is: SKP1-like 20 (TAIR:AT2G45950.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 512.0) & (original description: no original description)


Gene families : OG_42_0003552 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003552_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Klebsormidium release: Kfl00774_0060
Cluster HCCA clusters: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
Mp3g05960.1 No alias target protein binding component SKP1/ASK1 of... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0006511 ubiquitin-dependent protein catabolic process IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0001871 pattern binding IEP Predicted GO
MF GO:0030246 carbohydrate binding IEP Predicted GO
MF GO:0030247 polysaccharide binding IEP Predicted GO
MF GO:2001070 starch binding IEP Predicted GO
InterPro domains Description Start Stop
IPR016072 Skp1_comp_dimer 189 226
No external refs found!