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  5. Solyc06g083420

Solyc06g083420


Description : Helicase/SANT-associated, DNA binding protein (AHRD V3.3 *** AT3G24880.3)


Gene families : OG_42_0002455 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002455_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc06g083420
Cluster HCCA clusters: Cluster_212

Target Alias Description ECC score Gene Family Method Actions
Bradi2g14375 No alias Helicase/SANT-associated, DNA binding protein 0.04 Orthogroups_2024-Update
Bradi2g41720 No alias Helicase/SANT-associated, DNA binding protein 0.03 Orthogroups_2024-Update
Kfl00231_0110 kfl00231_0110_v1.1 (at3g24870 : 95.5) Helicase/SANT-associated, DNA binding... 0.02 Orthogroups_2024-Update
Seita.3G121600.1 No alias component *(EAF1) of NuA4 histone acetyltransferase complex 0.04 Orthogroups_2024-Update
Sobic.003G196300.2 No alias component *(EAF1) of NuA4 histone acetyltransferase complex 0.03 Orthogroups_2024-Update
Sobic.009G256300.1 No alias component *(EAF1) of NuA4 histone acetyltransferase complex 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Predicted GO
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predicted GO
MF GO:0003774 motor activity IEP Predicted GO
MF GO:0003777 microtubule motor activity IEP Predicted GO
MF GO:0004871 obsolete signal transducer activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005783 endoplasmic reticulum IEP Predicted GO
CC GO:0005834 heterotrimeric G-protein complex IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0006402 mRNA catabolic process IEP Predicted GO
BP GO:0006928 movement of cell or subcellular component IEP Predicted GO
BP GO:0007017 microtubule-based process IEP Predicted GO
BP GO:0007018 microtubule-based movement IEP Predicted GO
BP GO:0007186 G protein-coupled receptor signaling pathway IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0008289 lipid binding IEP Predicted GO
BP GO:0010629 negative regulation of gene expression IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
MF GO:0016597 amino acid binding IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0031406 carboxylic acid binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0035091 phosphatidylinositol binding IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
MF GO:0043177 organic acid binding IEP Predicted GO
CC GO:0044459 plasma membrane part IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
CC GO:0098797 plasma membrane protein complex IEP Predicted GO
CC GO:1905360 GTPase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR014012 HSA_dom 594 632
No external refs found!