1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc06g083580

Solyc06g083580


Description : Pectate lyase (AHRD V3.3 *** A0A022QXK5_ERYGU)


Gene families : OG_42_0000086 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000086_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc06g083580
Cluster HCCA clusters: Cluster_265

Target Alias Description ECC score Gene Family Method Actions
A4A49_16129 No alias putative pectate lyase 18 0.03 Orthogroups_2024-Update
A4A49_16446 No alias putative pectate lyase 13 0.04 Orthogroups_2024-Update
Brara.G01649.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.03 Orthogroups_2024-Update
Brara.G02558.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.03 Orthogroups_2024-Update
Brara.K00935.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.03 Orthogroups_2024-Update
Brara.K01484.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.03 Orthogroups_2024-Update
Glyma.10G125000 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
HORVU3Hr1G075970.2 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.03 Orthogroups_2024-Update
MA_10430145g0030 No alias (at4g13210 : 482.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
PSME_00017512-RA No alias (at4g24780 : 545.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
PSME_00036578-RA No alias (at5g48900 : 578.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
Potri.008G182200 No alias Pectate lyase family protein 0.03 Orthogroups_2024-Update
Seita.7G017900.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.02 Orthogroups_2024-Update
Solyc02g080910 No alias Pectate lyase (AHRD V3.3 *** K4B9W1_SOLLC) 0.03 Orthogroups_2024-Update
Solyc06g071020 No alias Pectate lyase (AHRD V3.3 *** K4C8H5_SOLLC) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0000398 mRNA splicing, via spliceosome IEA InterProScan predictions
CC GO:0005681 spliceosomal complex IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002022 Pec_lyase 347 521
IPR004123 Dim1 5 120
No external refs found!