- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Aliases : kfl00842_0010_v1.1
Description : (at3g53760 : 644.0) Encodes GCP4 (gamma-Tubulin Complex Protein 4), required for microtubule organization.; GAMMA-TUBULIN COMPLEX PROTEIN 4 (GCP4); CONTAINS InterPro DOMAIN/s: Spc97/Spc98 (InterPro:IPR007259); BEST Arabidopsis thaliana protein match is: spindle pole body component 98 (TAIR:AT5G06680.1); Has 1249 Blast hits to 1181 proteins in 191 species: Archae - 0; Bacteria - 0; Metazoa - 551; Fungi - 320; Plants - 155; Viruses - 0; Other Eukaryotes - 223 (source: NCBI BLink). & (q9sc88|gcp4_medtr : 619.0) Gamma-tubulin complex component 4 homolog - Medicago truncatula (Barrel medic) & (reliability: 1288.0) & (original description: no original description)
Gene families : OG_42_0008108 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0008108_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Klebsormidium release: Kfl00842_0010 | |
| Cluster | HCCA clusters: Cluster_40 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Brara.I03662.1 | No alias | component *(GCP4) of gamma-Tubulin ring complex | 0.02 | Orthogroups_2024-Update | |
| Glyma.10G017800 | No alias | GAMMA-TUBULIN COMPLEX PROTEIN 4 | 0.02 | Orthogroups_2024-Update | |
| HORVU1Hr1G022100.2 | No alias | component *(GCP4) of gamma-Tubulin ring complex | 0.02 | Orthogroups_2024-Update | |
| Pp1s34_188V6 | No alias | gamma complex associated protein 4 | 0.02 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0043015 | gamma-tubulin binding | IEA | InterProScan predictions |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000151 | ubiquitin ligase complex | IEP | Predicted GO |
| CC | GO:0000152 | nuclear ubiquitin ligase complex | IEP | Predicted GO |
| MF | GO:0004594 | pantothenate kinase activity | IEP | Predicted GO |
| MF | GO:0004619 | phosphoglycerate mutase activity | IEP | Predicted GO |
| MF | GO:0004649 | poly(ADP-ribose) glycohydrolase activity | IEP | Predicted GO |
| CC | GO:0005680 | anaphase-promoting complex | IEP | Predicted GO |
| BP | GO:0007088 | regulation of mitotic nuclear division | IEP | Predicted GO |
| BP | GO:0007346 | regulation of mitotic cell cycle | IEP | Predicted GO |
| MF | GO:0008270 | zinc ion binding | IEP | Predicted GO |
| MF | GO:0008289 | lipid binding | IEP | Predicted GO |
| MF | GO:0008641 | ubiquitin-like modifier activating enzyme activity | IEP | Predicted GO |
| MF | GO:0008897 | holo-[acyl-carrier-protein] synthase activity | IEP | Predicted GO |
| BP | GO:0010564 | regulation of cell cycle process | IEP | Predicted GO |
| BP | GO:0010965 | regulation of mitotic sister chromatid separation | IEP | Predicted GO |
| BP | GO:0015936 | coenzyme A metabolic process | IEP | Predicted GO |
| BP | GO:0015937 | coenzyme A biosynthetic process | IEP | Predicted GO |
| MF | GO:0016780 | phosphotransferase activity, for other substituted phosphate groups | IEP | Predicted GO |
| MF | GO:0016868 | intramolecular transferase activity, phosphotransferases | IEP | Predicted GO |
| MF | GO:0016877 | ligase activity, forming carbon-sulfur bonds | IEP | Predicted GO |
| BP | GO:0017038 | protein import | IEP | Predicted GO |
| BP | GO:0030071 | regulation of mitotic metaphase/anaphase transition | IEP | Predicted GO |
| CC | GO:0031461 | cullin-RING ubiquitin ligase complex | IEP | Predicted GO |
| BP | GO:0033043 | regulation of organelle organization | IEP | Predicted GO |
| BP | GO:0033044 | regulation of chromosome organization | IEP | Predicted GO |
| BP | GO:0033045 | regulation of sister chromatid segregation | IEP | Predicted GO |
| BP | GO:0033047 | regulation of mitotic sister chromatid segregation | IEP | Predicted GO |
| BP | GO:0033865 | nucleoside bisphosphate metabolic process | IEP | Predicted GO |
| BP | GO:0033866 | nucleoside bisphosphate biosynthetic process | IEP | Predicted GO |
| BP | GO:0033875 | ribonucleoside bisphosphate metabolic process | IEP | Predicted GO |
| BP | GO:0034030 | ribonucleoside bisphosphate biosynthetic process | IEP | Predicted GO |
| BP | GO:0034032 | purine nucleoside bisphosphate metabolic process | IEP | Predicted GO |
| BP | GO:0034033 | purine nucleoside bisphosphate biosynthetic process | IEP | Predicted GO |
| MF | GO:0043167 | ion binding | IEP | Predicted GO |
| MF | GO:0043169 | cation binding | IEP | Predicted GO |
| MF | GO:0046537 | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity | IEP | Predicted GO |
| MF | GO:0046872 | metal ion binding | IEP | Predicted GO |
| MF | GO:0046914 | transition metal ion binding | IEP | Predicted GO |
| BP | GO:0051128 | regulation of cellular component organization | IEP | Predicted GO |
| MF | GO:0051536 | iron-sulfur cluster binding | IEP | Predicted GO |
| MF | GO:0051540 | metal cluster binding | IEP | Predicted GO |
| BP | GO:0051783 | regulation of nuclear division | IEP | Predicted GO |
| BP | GO:0051983 | regulation of chromosome segregation | IEP | Predicted GO |
| BP | GO:1901987 | regulation of cell cycle phase transition | IEP | Predicted GO |
| BP | GO:1901990 | regulation of mitotic cell cycle phase transition | IEP | Predicted GO |
| BP | GO:1902099 | regulation of metaphase/anaphase transition of cell cycle | IEP | Predicted GO |
| BP | GO:1905818 | regulation of chromosome separation | IEP | Predicted GO |
No InterPro domains available for this sequence
| No external refs found! |