Solyc07g005930

Description : DNA-directed RNA polymerase (AHRD V3.3 *** K4CB64_SOLLC)

Gene families : OG_42_0001092 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001092_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Solyc07g005930
Cluster	HCCA clusters: Cluster_54

Target	Alias	Description	ECC score	Gene Family Method
Bradi1g31066	No alias	DNA/RNA polymerases superfamily protein	0.03	Orthogroups_2024-Update
Brara.B00618.1	No alias	nuclear-encoded organellar RNA polymerase *(NEP)	0.03	Orthogroups_2024-Update
GRMZM2G115564	No alias	DNA/RNA polymerases superfamily protein	0.03	Orthogroups_2024-Update
Glyma.08G263000	No alias	male gametophyte defective 3	0.04	Orthogroups_2024-Update
LOC_Os06g44230	No alias	DNA-directed RNA polymerase 3A, chloroplast precursor,...	0.03	Orthogroups_2024-Update
Potri.010G136700	No alias	male gametophyte defective 3	0.03	Orthogroups_2024-Update
Potri.018G103300	No alias	DNA/RNA polymerases superfamily protein	0.03	Orthogroups_2024-Update
Sobic.010G211500.1	No alias	nuclear-encoded organellar RNA polymerase *(NEP)	0.03	Orthogroups_2024-Update
Sopen07g002060	No alias	DNA-dependent RNA polymerase	0.08	Orthogroups_2024-Update
evm.model.contig_511.3	No alias	(at2g24120 : 493.0) SCABRA 3 (SCA3); FUNCTIONS IN:...	0.01	Orthogroups_2024-Update
evm.model.tig00021493.48	No alias	no hits & (original description: no original description)	0.02	Orthogroups_2024-Update
evm.model.tig00021493.49	No alias	(q8l6j3\|rpo2b_tobac : 377.0) DNA-directed RNA polymerase...	0.01	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0004797	thymidine kinase activity	IEP	Predicted GO
MF	GO:0010181	FMN binding	IEP	Predicted GO
BP	GO:0016073	snRNA metabolic process	IEP	Predicted GO
BP	GO:0016180	snRNA processing	IEP	Predicted GO
MF	GO:0019136	deoxynucleoside kinase activity	IEP	Predicted GO
MF	GO:0019205	nucleobase-containing compound kinase activity	IEP	Predicted GO
MF	GO:0019206	nucleoside kinase activity	IEP	Predicted GO
MF	GO:0019239	deaminase activity	IEP	Predicted GO
BP	GO:0031123	RNA 3'-end processing	IEP	Predicted GO
MF	GO:0032553	ribonucleotide binding	IEP	Predicted GO
BP	GO:0034472	snRNA 3'-end processing	IEP	Predicted GO
BP	GO:0034477	U6 snRNA 3'-end processing	IEP	Predicted GO
BP	GO:0043628	ncRNA 3'-end processing	IEP	Predicted GO
MF	GO:0097367	carbohydrate derivative binding	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR029262	RPOL_N	33	351
IPR002092	DNA-dir_Rpol_phage-type	473	863

External Links

No external refs found!

Solyc07g005930

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation