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  5. LOC_Os01g02180

LOC_Os01g02180


Description : expressed protein


Gene families : OG_42_0001144 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001144_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os01g02180
Cluster HCCA clusters: cluster_0066

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G558539 No alias Protein of unknown function (DUF1664) 0.02 Orthogroups_2024-Update
LOC_Os05g08980 No alias expressed protein 0.02 Orthogroups_2024-Update
Potri.014G160800 No alias Protein of unknown function (DUF1664) 0.03 Orthogroups_2024-Update
Pp1s257_33V6 No alias T20F6.13; expressed protein [Arabidopsis thaliana] 0.02 Orthogroups_2024-Update
Pp1s51_73V6 No alias T7N9.6; bZIP family transcription factor [Arabidopsis thaliana] 0.01 Orthogroups_2024-Update
Seita.3G072300.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.5G065100.1 No alias Unknown function 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000149 SNARE binding IEP Predicted GO
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Predicted GO
CC GO:0005681 spliceosomal complex IEP Predicted GO
BP GO:0007165 signal transduction IEP Predicted GO
MF GO:0008565 protein transporter activity IEP Predicted GO
MF GO:0019905 syntaxin binding IEP Predicted GO
MF GO:0032977 membrane insertase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR012458 DUF1664 88 209
No external refs found!