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  5. LOC_Os01g02720

LOC_Os01g02720


Description : elongation factor Tu, putative, expressed


Gene families : OG_42_0004109 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004109_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Oryza release: LOC_Os01g02720
Cluster HCCA clusters: cluster_0051

Target Alias Description ECC score Gene Family Method Actions
At5g10630 No alias Translation elongation factor EF1A/initiation factor... 0.02 Orthogroups_2024-Update
Brara.B00365.1 No alias associated EXO9 interaction GTPase *(SKI7) & GTPase... 0.02 Orthogroups_2024-Update
evm.model.tig00000383.57 No alias (at5g10630 : 146.0) Translation elongation factor... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA InterProScan predictions
MF GO:0005525 GTP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEP Predicted GO
CC GO:0005849 mRNA cleavage factor complex IEP Predicted GO
BP GO:0006378 mRNA polyadenylation IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0030258 lipid modification IEP Predicted GO
BP GO:0030259 lipid glycosylation IEP Predicted GO
BP GO:0031123 RNA 3'-end processing IEP Predicted GO
BP GO:0031124 mRNA 3'-end processing IEP Predicted GO
MF GO:0031625 ubiquitin protein ligase binding IEP Predicted GO
BP GO:0043631 RNA polyadenylation IEP Predicted GO
MF GO:0044389 ubiquitin-like protein ligase binding IEP Predicted GO
InterPro domains Description Start Stop
IPR000795 TF_GTP-bd_dom 223 441
IPR004160 Transl_elong_EFTu/EF1A_C 551 649
No external refs found!