LOC_Os01g03730

Description : nuclease PA3, putative, expressed

Gene families : OG_42_0001102 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001102_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza release: LOC_Os01g03730
Cluster	HCCA clusters: cluster_0040

Target	Alias	Description	ECC score	Gene Family Method
A4A49_36072	No alias	endonuclease 1	0.02	Orthogroups_2024-Update
At4g21590	No alias	Endonuclease 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8LDW6]	0.03	Orthogroups_2024-Update
Bradi5g24430	No alias	endonuclease 2	0.05	Orthogroups_2024-Update
MA_158988g0010	No alias	(at4g21585 : 345.0) Encodes a putative endonuclease but...	0.03	Orthogroups_2024-Update
PSME_00037308-RA	No alias	(at4g21585 : 342.0) Encodes a putative endonuclease but...	0.03	Orthogroups_2024-Update
Seita.5G087300.1	No alias	EC_3.1 hydrolase acting on ester bond & DNA endonuclease *(ENDO)	0.02	Orthogroups_2024-Update
Sobic.003G087300.1	No alias	EC_3.1 hydrolase acting on ester bond & DNA endonuclease *(ENDO)	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006308	DNA catabolic process	IEA	InterProScan predictions
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
BP	GO:0019439	aromatic compound catabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034655	nucleobase-containing compound catabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0044270	cellular nitrogen compound catabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046700	heterocycle catabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901361	organic cyclic compound catabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0002682	regulation of immune system process	IEP	Predicted GO
BP	GO:0002831	regulation of response to biotic stimulus	IEP	Predicted GO
BP	GO:0003006	developmental process involved in reproduction	IEP	Predicted GO
MF	GO:0003883	CTP synthase activity	IEP	Predicted GO
MF	GO:0004177	aminopeptidase activity	IEP	Predicted GO
MF	GO:0004334	fumarylacetoacetase activity	IEP	Predicted GO
MF	GO:0005215	transporter activity	IEP	Predicted GO
MF	GO:0005244	voltage-gated ion channel activity	IEP	Predicted GO
MF	GO:0005247	voltage-gated chloride channel activity	IEP	Predicted GO
MF	GO:0005253	anion channel activity	IEP	Predicted GO
MF	GO:0005254	chloride channel activity	IEP	Predicted GO
BP	GO:0006220	pyrimidine nucleotide metabolic process	IEP	Predicted GO
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	IEP	Predicted GO
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	Predicted GO
BP	GO:0006810	transport	IEP	Predicted GO
BP	GO:0006811	ion transport	IEP	Predicted GO
BP	GO:0006814	sodium ion transport	IEP	Predicted GO
BP	GO:0006820	anion transport	IEP	Predicted GO
BP	GO:0006821	chloride transport	IEP	Predicted GO
BP	GO:0006835	dicarboxylic acid transport	IEP	Predicted GO
BP	GO:0007275	multicellular organism development	IEP	Predicted GO
MF	GO:0008308	voltage-gated anion channel activity	IEP	Predicted GO
BP	GO:0009117	nucleotide metabolic process	IEP	Predicted GO
BP	GO:0009119	ribonucleoside metabolic process	IEP	Predicted GO
BP	GO:0009790	embryo development	IEP	Predicted GO
BP	GO:0009793	embryo development ending in seed dormancy	IEP	Predicted GO
BP	GO:0010112	regulation of systemic acquired resistance	IEP	Predicted GO
MF	GO:0010181	FMN binding	IEP	Predicted GO
MF	GO:0015108	chloride transmembrane transporter activity	IEP	Predicted GO
BP	GO:0015711	organic anion transport	IEP	Predicted GO
BP	GO:0015740	C4-dicarboxylate transport	IEP	Predicted GO
BP	GO:0015743	malate transport	IEP	Predicted GO
BP	GO:0015849	organic acid transport	IEP	Predicted GO
BP	GO:0015969	guanosine tetraphosphate metabolic process	IEP	Predicted GO
CC	GO:0016020	membrane	IEP	Predicted GO
MF	GO:0016746	transferase activity, transferring acyl groups	IEP	Predicted GO
MF	GO:0016747	transferase activity, transferring acyl groups other than amino-acyl groups	IEP	Predicted GO
MF	GO:0016822	hydrolase activity, acting on acid carbon-carbon bonds	IEP	Predicted GO
MF	GO:0016823	hydrolase activity, acting on acid carbon-carbon bonds, in ketonic substances	IEP	Predicted GO
BP	GO:0022414	reproductive process	IEP	Predicted GO
MF	GO:0022832	voltage-gated channel activity	IEP	Predicted GO
MF	GO:0030151	molybdenum ion binding	IEP	Predicted GO
BP	GO:0031347	regulation of defense response	IEP	Predicted GO
BP	GO:0032101	regulation of response to external stimulus	IEP	Predicted GO
BP	GO:0032501	multicellular organismal process	IEP	Predicted GO
BP	GO:0032502	developmental process	IEP	Predicted GO
BP	GO:0033865	nucleoside bisphosphate metabolic process	IEP	Predicted GO
BP	GO:0033875	ribonucleoside bisphosphate metabolic process	IEP	Predicted GO
BP	GO:0034032	purine nucleoside bisphosphate metabolic process	IEP	Predicted GO
BP	GO:0034035	purine ribonucleoside bisphosphate metabolic process	IEP	Predicted GO
CC	GO:0034357	photosynthetic membrane	IEP	Predicted GO
BP	GO:0042126	nitrate metabolic process	IEP	Predicted GO
BP	GO:0042128	nitrate assimilation	IEP	Predicted GO
BP	GO:0042278	purine nucleoside metabolic process	IEP	Predicted GO
CC	GO:0042651	thylakoid membrane	IEP	Predicted GO
BP	GO:0043900	regulation of multi-organism process	IEP	Predicted GO
BP	GO:0044281	small molecule metabolic process	IEP	Predicted GO
BP	GO:0045088	regulation of innate immune response	IEP	Predicted GO
BP	GO:0046128	purine ribonucleoside metabolic process	IEP	Predicted GO
BP	GO:0046942	carboxylic acid transport	IEP	Predicted GO
BP	GO:0048583	regulation of response to stimulus	IEP	Predicted GO
BP	GO:0048856	anatomical structure development	IEP	Predicted GO
BP	GO:0050776	regulation of immune response	IEP	Predicted GO
BP	GO:0051179	localization	IEP	Predicted GO
BP	GO:0051234	establishment of localization	IEP	Predicted GO
MF	GO:0051920	peroxiredoxin activity	IEP	Predicted GO
BP	GO:0055085	transmembrane transport	IEP	Predicted GO
BP	GO:0071941	nitrogen cycle metabolic process	IEP	Predicted GO
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	Predicted GO
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	Predicted GO
BP	GO:0080134	regulation of response to stress	IEP	Predicted GO
BP	GO:1901068	guanosine-containing compound metabolic process	IEP	Predicted GO
BP	GO:2001057	reactive nitrogen species metabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR003154	S1/P1nuclease	34	293

External Links

No external refs found!

LOC_Os01g03730

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation