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  5. LOC_Os01g05900

LOC_Os01g05900


Description : Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed


Gene families : OG_42_0000153 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000153_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os01g05900
Cluster HCCA clusters: cluster_0072

Target Alias Description ECC score Gene Family Method Actions
A4A49_56759 No alias putative histone h2b.1 0.03 Orthogroups_2024-Update
At1g07790 No alias Histone H2B.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQQ4] 0.02 Orthogroups_2024-Update
At3g53650 No alias Histone H2B.8 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFF6] 0.03 Orthogroups_2024-Update
Brara.J01445.1 No alias histone *(H2B) 0.02 Orthogroups_2024-Update
GRMZM2G046841 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Glyma.10G198500 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
HORVU3Hr1G086610.4 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
HORVU6Hr1G083110.1 No alias histone *(H2B) 0.02 Orthogroups_2024-Update
MA_1040421g0010 No alias (at3g45980 : 114.0) Encodes a histone 2B (H2B) protein.... 0.03 Orthogroups_2024-Update
MA_10428006g0010 No alias (at3g45980 : 145.0) Encodes a histone 2B (H2B) protein.... 0.03 Orthogroups_2024-Update
MA_10435143g0020 No alias (at3g45980 : 145.0) Encodes a histone 2B (H2B) protein.... 0.04 Orthogroups_2024-Update
MA_10436516g0020 No alias (at3g45980 : 175.0) Encodes a histone 2B (H2B) protein.... 0.02 Orthogroups_2024-Update
MA_8065g0010 No alias (at5g22880 : 173.0) Encodes a histone 2B (H2B) protein.... 0.03 Orthogroups_2024-Update
PSME_00000376-RA No alias (p54347|h2b4_chlre : 153.0) Histone H2B.4 (H2B-IV) -... 0.04 Orthogroups_2024-Update
Potri.009G028001 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Potri.010G230801 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Seita.5G107600.1 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
Sopen05g033890 No alias Core histone H2A/H2B/H3/H4 0.02 Orthogroups_2024-Update
evm.model.contig_533.3 No alias (p16868|h2b4_volca : 127.0) Histone H2B.4 (H2B-IV) -... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA InterProScan predictions
MF GO:0003677 DNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0003872 6-phosphofructokinase activity IEP Predicted GO
MF GO:0004601 peroxidase activity IEP Predicted GO
MF GO:0004637 phosphoribosylamine-glycine ligase activity IEP Predicted GO
MF GO:0005102 signaling receptor binding IEP Predicted GO
CC GO:0005789 endoplasmic reticulum membrane IEP Predicted GO
BP GO:0006144 purine nucleobase metabolic process IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0006979 response to oxidative stress IEP Predicted GO
MF GO:0008083 growth factor activity IEP Predicted GO
BP GO:0008283 cell proliferation IEP Predicted GO
MF GO:0008443 phosphofructokinase activity IEP Predicted GO
BP GO:0009112 nucleobase metabolic process IEP Predicted GO
BP GO:0009113 purine nucleobase biosynthetic process IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
MF GO:0016209 antioxidant activity IEP Predicted GO
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0019200 carbohydrate kinase activity IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
MF GO:0030545 receptor regulator activity IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
BP GO:0042440 pigment metabolic process IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
BP GO:0046112 nucleobase biosynthetic process IEP Predicted GO
BP GO:0046148 pigment biosynthetic process IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0048018 receptor ligand activity IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
BP GO:0048518 positive regulation of biological process IEP Predicted GO
BP GO:0048580 regulation of post-embryonic development IEP Predicted GO
BP GO:0048582 positive regulation of post-embryonic development IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050793 regulation of developmental process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0051094 positive regulation of developmental process IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051239 regulation of multicellular organismal process IEP Predicted GO
BP GO:0051240 positive regulation of multicellular organismal process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0055114 oxidation-reduction process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
BP GO:0072521 purine-containing compound metabolic process IEP Predicted GO
BP GO:0072522 purine-containing compound biosynthetic process IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000026 regulation of multicellular organismal development IEP Predicted GO
BP GO:2000038 regulation of stomatal complex development IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2000123 positive regulation of stomatal complex development IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 5 129
No external refs found!