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Description : Pentatricopeptide repeat-containing family protein (AHRD V3.3 *** B9H9D6_POPTR)
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Solanum release: Solyc07g006990 | |
| Cluster | HCCA clusters: Cluster_273 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| 424099 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Bradi1g36120 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Bradi2g53377 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Bradi2g62180 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Bradi5g14000 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Brara.E01438.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Brara.G01483.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| Brara.J00794.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Glyma.02G006900 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
| Glyma.03G227900 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Orthogroups_2024-Update | |
| Glyma.08G294900 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.11G006200 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.16G209700 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| HORVU5Hr1G047290.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| HORVU6Hr1G079830.1 | No alias | RNA editing factor *(CLB19) | 0.03 | Orthogroups_2024-Update | |
| Potri.001G258500 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Orthogroups_2024-Update | |
| Potri.004G043400 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Potri.006G211400 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Orthogroups_2024-Update | |
| Potri.007G146800 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Potri.012G135600 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.04 | Orthogroups_2024-Update | |
| Potri.017G137200 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Potri.T137000 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
| Seita.2G109100.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Seita.2G177900.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Seita.4G168900.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Seita.5G044700.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Seita.5G124400.1 | No alias | RNA editing factor *(OTP81) | 0.02 | Orthogroups_2024-Update | |
| Seita.5G357300.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Seita.5G360300.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Seita.9G151300.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Seita.9G355700.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Seita.9G477500.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sobic.001G069300.2 | No alias | RNA editing factor *(DEK36) | 0.02 | Orthogroups_2024-Update | |
| Sobic.001G212200.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Sobic.001G312700.1 | No alias | RNA editing factor *(MEF25) | 0.02 | Orthogroups_2024-Update | |
| Sobic.002G111700.6 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Sobic.002G292300.2 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sobic.002G389200.2 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Sobic.003G047400.1 | No alias | RNA editing factor *(OTP81) | 0.02 | Orthogroups_2024-Update | |
| Sobic.003G119100.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Sobic.003G237100.2 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Sobic.004G051600.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Sobic.004G053100.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Sobic.004G217900.2 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Sobic.007G208400.1 | No alias | RNA editing factor *(REME1) | 0.02 | Orthogroups_2024-Update | |
| Sobic.008G009000.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Sobic.009G136200.1 | No alias | RNA editing factor *(MEF32) | 0.02 | Orthogroups_2024-Update | |
| Sopen01g037380 | No alias | PPR repeat | 0.03 | Orthogroups_2024-Update | |
| Sopen02g025050 | No alias | PPR repeat family | 0.05 | Orthogroups_2024-Update | |
| Sopen02g033370 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
| Sopen02g039140 | No alias | PPR repeat | 0.03 | Orthogroups_2024-Update | |
| Sopen03g038010 | No alias | PPR repeat | 0.03 | Orthogroups_2024-Update | |
| Sopen11g001900 | No alias | PPR repeat | 0.03 | Orthogroups_2024-Update | |
| Sopen11g001910 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
| Sopen11g002630 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
| Sopen11g009180 | No alias | PPR repeat | 0.04 | Orthogroups_2024-Update | |
| Sopen11g017250 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000175 | 3'-5'-exoribonuclease activity | IEP | Predicted GO |
| MF | GO:0003723 | RNA binding | IEP | Predicted GO |
| MF | GO:0004129 | cytochrome-c oxidase activity | IEP | Predicted GO |
| MF | GO:0004518 | nuclease activity | IEP | Predicted GO |
| MF | GO:0004521 | endoribonuclease activity | IEP | Predicted GO |
| MF | GO:0004526 | ribonuclease P activity | IEP | Predicted GO |
| MF | GO:0004527 | exonuclease activity | IEP | Predicted GO |
| MF | GO:0004532 | exoribonuclease activity | IEP | Predicted GO |
| MF | GO:0004540 | ribonuclease activity | IEP | Predicted GO |
| MF | GO:0004549 | tRNA-specific ribonuclease activity | IEP | Predicted GO |
| CC | GO:0005739 | mitochondrion | IEP | Predicted GO |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Predicted GO |
| BP | GO:0006396 | RNA processing | IEP | Predicted GO |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Predicted GO |
| MF | GO:0008408 | 3'-5' exonuclease activity | IEP | Predicted GO |
| MF | GO:0015002 | heme-copper terminal oxidase activity | IEP | Predicted GO |
| BP | GO:0015985 | energy coupled proton transport, down electrochemical gradient | IEP | Predicted GO |
| BP | GO:0015986 | ATP synthesis coupled proton transport | IEP | Predicted GO |
| BP | GO:0016070 | RNA metabolic process | IEP | Predicted GO |
| MF | GO:0016675 | oxidoreductase activity, acting on a heme group of donors | IEP | Predicted GO |
| MF | GO:0016676 | oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor | IEP | Predicted GO |
| MF | GO:0016779 | nucleotidyltransferase activity | IEP | Predicted GO |
| MF | GO:0016796 | exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | IEP | Predicted GO |
| MF | GO:0016891 | endoribonuclease activity, producing 5'-phosphomonoesters | IEP | Predicted GO |
| MF | GO:0016893 | endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | IEP | Predicted GO |
| MF | GO:0016896 | exoribonuclease activity, producing 5'-phosphomonoesters | IEP | Predicted GO |
| BP | GO:0018130 | heterocycle biosynthetic process | IEP | Predicted GO |
| BP | GO:0019438 | aromatic compound biosynthetic process | IEP | Predicted GO |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | Predicted GO |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Predicted GO |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Predicted GO |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Predicted GO |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 381 | 429 |
| IPR002885 | Pentatricopeptide_repeat | 178 | 224 |
| IPR002885 | Pentatricopeptide_repeat | 77 | 123 |
| IPR002885 | Pentatricopeptide_repeat | 457 | 481 |
| IPR002885 | Pentatricopeptide_repeat | 256 | 280 |
| IPR002885 | Pentatricopeptide_repeat | 152 | 177 |
| IPR002885 | Pentatricopeptide_repeat | 283 | 312 |
| IPR032867 | DYW_dom | 556 | 683 |
| No external refs found! |