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  5. LOC_Os01g08470

LOC_Os01g08470


Description : retrotransposon protein, putative, unclassified, expressed


Gene families : OG_42_0000323 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000323_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os01g08470
Cluster HCCA clusters: cluster_0136

Target Alias Description ECC score Gene Family Method Actions
134330 No alias Leucine-rich repeat (LRR) family protein 0.02 Orthogroups_2024-Update
A4A49_26804 No alias pollen-specific leucine-rich repeat extensin-like protein 1 0.03 Orthogroups_2024-Update
Bradi1g05600 No alias Leucine-rich repeat (LRR) family protein 0.03 Orthogroups_2024-Update
GRMZM2G300969 No alias Leucine-rich repeat (LRR) family protein 0.02 Orthogroups_2024-Update
GRMZM2G341410 No alias Leucine-rich repeat (LRR) family protein 0.03 Orthogroups_2024-Update
HORVU6Hr1G019290.2 No alias LRR-domain extensin 0.02 Orthogroups_2024-Update
MA_100985g0010 No alias (at4g13340 : 496.0) Leucine-rich repeat (LRR) family... 0.03 Orthogroups_2024-Update
Potri.009G108100 No alias Leucine-rich repeat (LRR) family protein 0.04 Orthogroups_2024-Update
Sobic.003G042200.2 No alias LRR-domain extensin 0.03 Orthogroups_2024-Update
Sobic.005G204500.1 No alias LRR-domain extensin 0.03 Orthogroups_2024-Update
Sobic.008G119501.1 No alias LRR-domain extensin 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0001871 pattern binding IEP Predicted GO
BP GO:0006270 DNA replication initiation IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
MF GO:0008324 cation transmembrane transporter activity IEP Predicted GO
BP GO:0016255 attachment of GPI anchor to protein IEP Predicted GO
BP GO:0017003 protein-heme linkage IEP Predicted GO
BP GO:0017004 cytochrome complex assembly IEP Predicted GO
BP GO:0017006 protein-tetrapyrrole linkage IEP Predicted GO
MF GO:0017176 phosphatidylinositol N-acetylglucosaminyltransferase activity IEP Predicted GO
MF GO:0030247 polysaccharide binding IEP Predicted GO
BP GO:0031123 RNA 3'-end processing IEP Predicted GO
BP GO:0031124 mRNA 3'-end processing IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
CC GO:0042765 GPI-anchor transamidase complex IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001611 Leu-rich_rpt 122 180
No external refs found!