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  5. LOC_Os01g10090

LOC_Os01g10090


Description : pentatricopeptide, putative, expressed


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os01g10090
Cluster HCCA clusters: cluster_0069

Target Alias Description ECC score Gene Family Method Actions
97289 No alias pentatricopeptide (PPR) repeat-containing protein 0.03 Orthogroups_2024-Update
A4A49_13653 No alias pentatricopeptide repeat-containing protein 0.02 Orthogroups_2024-Update
At3g63370 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.02 Orthogroups_2024-Update
At5g03800 No alias Glycosyltransferase (Fragment)... 0.03 Orthogroups_2024-Update
Bradi3g40080 No alias mitochondrial editing factor 19 0.03 Orthogroups_2024-Update
Bradi4g38420 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.20G154600 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 Orthogroups_2024-Update
HORVU2Hr1G124480.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU4Hr1G021240.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU5Hr1G056450.2 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU5Hr1G101000.3 No alias RNA editing factor *(DEK36) 0.03 Orthogroups_2024-Update
LOC_Os02g06880 No alias EMB2758, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os02g58330 No alias expressed protein 0.02 Orthogroups_2024-Update
LOC_Os03g11700 No alias pentatricopeptide repeat domain containing protein,... 0.03 Orthogroups_2024-Update
LOC_Os07g39910 No alias pentatricopeptide repeat domain containing protein,... 0.03 Orthogroups_2024-Update
LOC_Os08g28830 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os08g38610 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os11g29360 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
MA_11074g0010 No alias (at3g57430 : 561.0) Encodes a chloroplast RNA editing... 0.02 Orthogroups_2024-Update
MA_668740g0020 No alias (at3g13770 : 627.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
PSME_00005244-RA No alias (at3g46790 : 286.0) Encodes a member of a PCMP (plant... 0.02 Orthogroups_2024-Update
PSME_00018763-RA No alias (at1g11290 : 389.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00031504-RA No alias (at3g23330 : 207.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
PSME_00051747-RA No alias (at1g11290 : 641.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00054674-RA No alias (at4g33170 : 289.0) Tetratricopeptide repeat (TPR)-like... 0.01 Orthogroups_2024-Update
Seita.2G293300.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.5G424500.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.9G477500.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.010G197400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc02g088650 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc05g023900 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Sopen01g015270 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen01g032860 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen11g001910 No alias PPR repeat family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004527 exonuclease activity IEP Predicted GO
MF GO:0004529 exodeoxyribonuclease activity IEP Predicted GO
MF GO:0004536 deoxyribonuclease activity IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
MF GO:0008131 primary amine oxidase activity IEP Predicted GO
MF GO:0008297 single-stranded DNA exodeoxyribonuclease activity IEP Predicted GO
MF GO:0008409 5'-3' exonuclease activity IEP Predicted GO
BP GO:0010215 cellulose microfibril organization IEP Predicted GO
BP GO:0016049 cell growth IEP Predicted GO
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP Predicted GO
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0016796 exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Predicted GO
MF GO:0016895 exodeoxyribonuclease activity, producing 5'-phosphomonoesters IEP Predicted GO
BP GO:0030198 extracellular matrix organization IEP Predicted GO
CC GO:0031225 anchored component of membrane IEP Predicted GO
MF GO:0035312 5'-3' exodeoxyribonuclease activity IEP Predicted GO
BP GO:0040007 growth IEP Predicted GO
BP GO:0043062 extracellular structure organization IEP Predicted GO
MF GO:0045145 single-stranded DNA 5'-3' exodeoxyribonuclease activity IEP Predicted GO
MF GO:0048038 quinone binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 351 397
IPR002885 Pentatricopeptide_repeat 108 155
IPR002885 Pentatricopeptide_repeat 249 297
IPR002885 Pentatricopeptide_repeat 425 450
IPR002885 Pentatricopeptide_repeat 215 244
IPR002885 Pentatricopeptide_repeat 77 102
IPR002885 Pentatricopeptide_repeat 187 208
No external refs found!