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  5. LOC_Os01g11120

LOC_Os01g11120


Description : CID11, putative, expressed


Gene families : OG_42_0000604 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000604_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os01g11120
Cluster HCCA clusters: cluster_0084

Target Alias Description ECC score Gene Family Method Actions
A4A49_17044 No alias polyadenylate-binding protein-interacting protein 12 0.03 Orthogroups_2024-Update
A4A49_39555 No alias polyadenylate-binding protein-interacting protein 9 0.02 Orthogroups_2024-Update
At5g24440 No alias Polyadenylate-binding protein-interacting protein 13... 0.03 Orthogroups_2024-Update
Brara.C03528.1 No alias Unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP Predicted GO
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
MF GO:0003779 actin binding IEP Predicted GO
MF GO:0004427 inorganic diphosphatase activity IEP Predicted GO
MF GO:0004527 exonuclease activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
BP GO:0006650 glycerophospholipid metabolic process IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
BP GO:0007010 cytoskeleton organization IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
MF GO:0008408 3'-5' exonuclease activity IEP Predicted GO
MF GO:0010181 FMN binding IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
MF GO:0017025 TBP-class protein binding IEP Predicted GO
MF GO:0030246 carbohydrate binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
BP GO:0046486 glycerolipid metabolic process IEP Predicted GO
BP GO:0046488 phosphatidylinositol metabolic process IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 222 285
IPR000504 RRM_dom 125 187
IPR009818 Ataxin-2_C 40 53
No external refs found!