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  5. LOC_Os01g12860

LOC_Os01g12860


Description : MYB family transcription factor, putative, expressed


Gene families : OG_42_0000047 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000047_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os01g12860
Cluster HCCA clusters: cluster_0034

Target Alias Description ECC score Gene Family Method Actions
Bradi2g23341 No alias myb domain protein 3r-5 0.04 Orthogroups_2024-Update
HORVU1Hr1G072430.21 No alias R1R2R3-MYB transcription factor 0.03 Orthogroups_2024-Update
HORVU3Hr1G086270.3 No alias R1R2R3-MYB transcription factor & MYB class-R2R3... 0.03 Orthogroups_2024-Update
Kfl00026_0540 kfl00026_0540_v1.1 (at5g40360 : 115.0) putative transcription factor... 0.02 Orthogroups_2024-Update
Kfl00043_0140 kfl00043_0140_v1.1 (at5g58850 : 99.8) Encodes a putative transcription... 0.02 Orthogroups_2024-Update
Seita.9G113200.1 No alias MYB class-R2R3 subgroup-21 transcription factor 0.06 Orthogroups_2024-Update
Solyc04g079360 No alias R2R3MYB transcription factor 77 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
BP GO:0006270 DNA replication initiation IEP Predicted GO
BP GO:0007275 multicellular organism development IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
CC GO:0030117 membrane coat IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
BP GO:0032501 multicellular organismal process IEP Predicted GO
BP GO:0032502 developmental process IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
BP GO:0048856 anatomical structure development IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001005 SANT/Myb 134 176
IPR001005 SANT/Myb 82 128
IPR001005 SANT/Myb 39 76
No external refs found!