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  5. LOC_Os01g15020

LOC_Os01g15020


Description : lissencephaly type-1-like homology motif, putative, expressed


Gene families : OG_42_0000373 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000373_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os01g15020
Cluster HCCA clusters: cluster_0066

Target Alias Description ECC score Gene Family Method Actions
404377 No alias TOPLESS-related 1 0.02 Orthogroups_2024-Update
HORVU3Hr1G035170.2 No alias transcriptional co-repressor *(TPL/TPR) & auxin... 0.03 Orthogroups_2024-Update
MA_16979g0020 No alias (at1g15750 : 344.0) Encodes a protein with several WD40... 0.02 Orthogroups_2024-Update
MA_33469g0010 No alias (at1g15750 : 740.0) Encodes a protein with several WD40... 0.03 Orthogroups_2024-Update
Mp7g17410.1 No alias transcriptional repressor (TPL). transcriptional... 0.02 Orthogroups_2024-Update
Potri.003G030000 No alias TOPLESS-related 1 0.02 Orthogroups_2024-Update
Potri.006G066800 No alias WUS-interacting protein 2 0.05 Orthogroups_2024-Update
Potri.013G012100 No alias TOPLESS-related 3 0.02 Orthogroups_2024-Update
Potri.018G023800 No alias TOPLESS-related 1 0.02 Orthogroups_2024-Update
Sopen00g010190 No alias hypothetical protein 0.02 Orthogroups_2024-Update
Sopen08g009970 No alias WD domain, G-beta repeat 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003774 motor activity IEP Predicted GO
MF GO:0004565 beta-galactosidase activity IEP Predicted GO
MF GO:0005096 GTPase activator activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0006354 DNA-templated transcription, elongation IEP Predicted GO
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Predicted GO
CC GO:0008023 transcription elongation factor complex IEP Predicted GO
MF GO:0008373 sialyltransferase activity IEP Predicted GO
CC GO:0009341 beta-galactosidase complex IEP Predicted GO
BP GO:0009719 response to endogenous stimulus IEP Predicted GO
BP GO:0009725 response to hormone IEP Predicted GO
BP GO:0010033 response to organic substance IEP Predicted GO
MF GO:0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEP Predicted GO
MF GO:0015020 glucuronosyltransferase activity IEP Predicted GO
MF GO:0015925 galactosidase activity IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
BP GO:0016569 covalent chromatin modification IEP Predicted GO
BP GO:0016570 histone modification IEP Predicted GO
CC GO:0016593 Cdc73/Paf1 complex IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
CC GO:0030880 RNA polymerase complex IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
BP GO:0042221 response to chemical IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001680 WD40_repeat 910 942
IPR001680 WD40_repeat 439 475
No external refs found!