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  5. LOC_Os01g16120

LOC_Os01g16120


Description : zinc finger, C3HC4 type domain containing protein, expressed


Gene families : OG_42_0000206 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000206_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os01g16120
Cluster HCCA clusters: cluster_0049

Target Alias Description ECC score Gene Family Method Actions
Glyma.04G153400 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
MA_169947g0010 No alias (at3g61460 : 156.0) Encodes a novel ring finger protein... 0.03 Orthogroups_2024-Update
PSME_00056848-RA No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
Sobic.010G006400.1 No alias Unknown function 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0004470 malic enzyme activity IEP Predicted GO
MF GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity IEP Predicted GO
MF GO:0004602 glutathione peroxidase activity IEP Predicted GO
MF GO:0005102 signaling receptor binding IEP Predicted GO
MF GO:0005516 calmodulin binding IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
BP GO:0006457 protein folding IEP Predicted GO
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
MF GO:0008083 growth factor activity IEP Predicted GO
BP GO:0008283 cell proliferation IEP Predicted GO
MF GO:0016615 malate dehydrogenase activity IEP Predicted GO
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Predicted GO
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0030545 receptor regulator activity IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
MF GO:0048018 receptor ligand activity IEP Predicted GO
BP GO:0048193 Golgi vesicle transport IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 102 145
No external refs found!