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  5. LOC_Os01g16900

LOC_Os01g16900


Description : dehydrogenase, putative, expressed


Gene families : OG_42_0001185 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001185_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os01g16900
Cluster HCCA clusters: cluster_0051

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G006672 No alias isocitrate dehydrogenase 1 0.02 Orthogroups_2024-Update
GRMZM2G025366 No alias isocitrate dehydrogenase 1 0.02 Orthogroups_2024-Update
GRMZM2G120857 No alias isocitrate dehydrogenase V 0.03 Orthogroups_2024-Update
Glyma.13G144900 No alias isocitrate dehydrogenase V 0.03 Orthogroups_2024-Update
HORVU6Hr1G053650.1 No alias regulatory component of isocitrate dehydrogenase... 0.02 Orthogroups_2024-Update
Kfl00023_0270 kfl00023_0270_v1.1 (at5g03290 : 547.0) Encodes a catalytic subunit of the... 0.01 Orthogroups_2024-Update
Potri.005G099600 No alias isocitrate dehydrogenase 1 0.03 Orthogroups_2024-Update
Sobic.003G129900.1 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor &... 0.02 Orthogroups_2024-Update
Solyc02g082860 No alias Isocitrate dehydrogenase, putative (AHRD V3.3 *** B9SRZ2_RICCO) 0.02 Orthogroups_2024-Update
Sopen08g026440 No alias Isocitrate/isopropylmalate dehydrogenase 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEA InterProScan predictions
BP GO:0055114 oxidation-reduction process IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
MF GO:0003714 transcription corepressor activity IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0004559 alpha-mannosidase activity IEP Predicted GO
MF GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
CC GO:0005681 spliceosomal complex IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
BP GO:0007165 signal transduction IEP Predicted GO
MF GO:0015923 mannosidase activity IEP Predicted GO
MF GO:0015924 mannosyl-oligosaccharide mannosidase activity IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0035091 phosphatidylinositol binding IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR024084 IsoPropMal-DH-like_dom 35 358
No external refs found!