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  5. LOC_Os01g18670

LOC_Os01g18670


Description : MDR-like ABC transporter, putative, expressed


Gene families : OG_42_0000040 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000040_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os01g18670
Cluster HCCA clusters: cluster_0094

Target Alias Description ECC score Gene Family Method Actions
84555 No alias ATP binding cassette subfamily B19 0.02 Orthogroups_2024-Update
A4A49_00814 No alias abc transporter b family member 4 0.03 Orthogroups_2024-Update
A4A49_06562 No alias abc transporter b family member 15 0.03 Orthogroups_2024-Update
Brara.I00328.1 No alias subfamily ABCB transporter 0.02 Orthogroups_2024-Update
GRMZM5G833207 No alias ATP binding cassette subfamily B4 0.03 Orthogroups_2024-Update
Glyma.08G342600 No alias ABC transporter family protein 0.03 Orthogroups_2024-Update
Glyma.13G119000 No alias P-glycoprotein 11 0.04 Orthogroups_2024-Update
Glyma.18G154200 No alias ABC transporter family protein 0.02 Orthogroups_2024-Update
LOC_Os04g38570 No alias multidrug resistance protein, putative, expressed 0.03 Orthogroups_2024-Update
MA_107576g0010 No alias (q6yuu5|mdr_orysa : 852.0) Putative multidrug resistance... 0.02 Orthogroups_2024-Update
Mp2g02910.1 No alias auxin efflux transporter (ABCB19). subfamily ABCB transporter 0.02 Orthogroups_2024-Update
Mp2g02920.1 No alias auxin efflux transporter (ABCB19). subfamily ABCB transporter 0.02 Orthogroups_2024-Update
PSME_00005534-RA No alias (at3g62150 : 1137.0) P-glycoprotein 21 (PGP21);... 0.02 Orthogroups_2024-Update
PSME_00031965-RA No alias (q6yuu5|mdr_orysa : 1268.0) Putative multidrug... 0.02 Orthogroups_2024-Update
PSME_00038380-RA No alias (q6yuu5|mdr_orysa : 1204.0) Putative multidrug... 0.02 Orthogroups_2024-Update
Potri.001G139600 No alias P-glycoprotein 2 0.03 Orthogroups_2024-Update
Potri.006G074100 No alias ABC transporter family protein 0.02 Orthogroups_2024-Update
Potri.010G210100 No alias P-glycoprotein 20 0.03 Orthogroups_2024-Update
Potri.017G081100 No alias ATP binding cassette subfamily B19 0.03 Orthogroups_2024-Update
Seita.1G055700.1 No alias subfamily ABCB transporter 0.02 Orthogroups_2024-Update
Seita.1G145300.1 No alias subfamily ABCB transporter 0.03 Orthogroups_2024-Update
Seita.5G189700.1 No alias subfamily ABCB transporter 0.04 Orthogroups_2024-Update
Seita.5G283600.1 No alias subfamily ABCB transporter 0.04 Orthogroups_2024-Update
Seita.5G283700.1 No alias subfamily ABCB transporter 0.02 Orthogroups_2024-Update
Sobic.006G014800.1 No alias ABC-B-type transporter *(AMN3) & subfamily ABCB transporter 0.04 Orthogroups_2024-Update
Solyc03g122070 No alias ABC transporter B family-like protein (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
Sopen09g003060 No alias ABC transporter transmembrane region 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
CC GO:0016021 integral component of membrane IEA InterProScan predictions
MF GO:0016887 ATPase activity IEA InterProScan predictions
MF GO:0042626 ATPase activity, coupled to transmembrane movement of substances IEA InterProScan predictions
BP GO:0055085 transmembrane transport IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0015267 channel activity IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
MF GO:0022803 passive transmembrane transporter activity IEP Predicted GO
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like 1061 1209
IPR011527 ABC1_TM_dom 719 989
IPR011527 ABC1_TM_dom 72 345
IPR003439 ABC_transporter-like 414 561
No external refs found!