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LOC_Os01g21420


Description : pre-mRNA-splicing factor SF2, putative, expressed


Gene families : OG_42_0001203 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001203_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os01g21420
Cluster HCCA clusters: cluster_0069

Target Alias Description ECC score Gene Family Method Actions
Potri.013G015500 No alias SERINE-ARGININE PROTEIN 30 0.02 Orthogroups_2024-Update
Solyc01g099810 No alias RNA-binding (RRM/RBD/RNP motifs) family protein (AHRD... 0.03 Orthogroups_2024-Update
Solyc03g082380 No alias Pre-mRNA splicing factor-like protein (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0006720 isoprenoid metabolic process IEP Predicted GO
BP GO:0006835 dicarboxylic acid transport IEP Predicted GO
BP GO:0008299 isoprenoid biosynthetic process IEP Predicted GO
BP GO:0015711 organic anion transport IEP Predicted GO
BP GO:0015740 C4-dicarboxylate transport IEP Predicted GO
BP GO:0015743 malate transport IEP Predicted GO
BP GO:0015849 organic acid transport IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
CC GO:0044430 cytoskeletal part IEP Predicted GO
BP GO:0046942 carboxylic acid transport IEP Predicted GO
BP GO:0048193 Golgi vesicle transport IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 175 237
No external refs found!