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  5. LOC_Os01g21990

LOC_Os01g21990


Description : CRS2-associated factor 2, chloroplast precursor, putative, expressed


Gene families : OG_42_0001286 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001286_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os01g21990
Cluster HCCA clusters: cluster_0043

Target Alias Description ECC score Gene Family Method Actions
A4A49_15851 No alias crs2-associated factor 1, mitochondrial 0.02 Orthogroups_2024-Update
A4A49_17343 No alias crs2-associated factor 2, mitochondrial 0.02 Orthogroups_2024-Update
Brara.G00072.1 No alias component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.02 Orthogroups_2024-Update
HORVU0Hr1G006680.2 No alias Unknown function 0.02 Orthogroups_2024-Update
MA_206934g0010 No alias (at1g23400 : 115.0) Promotes the splicing of chloroplast... 0.02 Orthogroups_2024-Update
Potri.006G156200 No alias RNA-binding CRS1 / YhbY (CRM) domain-containing protein 0.03 Orthogroups_2024-Update
Potri.010G042500 No alias RNA-binding CRS1 / YhbY (CRM) domain-containing protein 0.03 Orthogroups_2024-Update
Seita.5G154500.1 No alias component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.03 Orthogroups_2024-Update
Solyc05g018240 No alias GSVIVT00005628001, HT7 (AHRD V3.3 *** A0A0A9GN13_ARUDO) 0.02 Orthogroups_2024-Update
Solyc07g064490 No alias CRS2-associated factor 1 (AHRD V3.3 *** A0A072THI3_MEDTR) 0.02 Orthogroups_2024-Update
Sopen05g015000 No alias CRS1 / YhbY (CRM) domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP Predicted GO
MF GO:0004363 glutathione synthase activity IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
CC GO:0005789 endoplasmic reticulum membrane IEP Predicted GO
BP GO:0006575 cellular modified amino acid metabolic process IEP Predicted GO
BP GO:0006644 phospholipid metabolic process IEP Predicted GO
BP GO:0006650 glycerophospholipid metabolic process IEP Predicted GO
BP GO:0006749 glutathione metabolic process IEP Predicted GO
BP GO:0006750 glutathione biosynthetic process IEP Predicted GO
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016881 acid-amino acid ligase activity IEP Predicted GO
BP GO:0019184 nonribosomal peptide biosynthetic process IEP Predicted GO
MF GO:0019207 kinase regulator activity IEP Predicted GO
MF GO:0019887 protein kinase regulator activity IEP Predicted GO
BP GO:0030258 lipid modification IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
BP GO:0046486 glycerolipid metabolic process IEP Predicted GO
BP GO:0046488 phosphatidylinositol metabolic process IEP Predicted GO
BP GO:0046834 lipid phosphorylation IEP Predicted GO
BP GO:0046854 phosphatidylinositol phosphorylation IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 230 313
IPR001890 RNA-binding_CRM 348 431
No external refs found!