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  5. LOC_Os01g28360

LOC_Os01g28360


Description : retrotransposon, putative, centromere-specific, expressed


Gene families : OG_42_0000239 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000239_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os01g28360
Cluster HCCA clusters: cluster_0125

Target Alias Description ECC score Gene Family Method Actions
Bradi1g31950 No alias F-box family protein 0.02 Orthogroups_2024-Update
Bradi3g44271 No alias F-box family protein 0.03 Orthogroups_2024-Update
GRMZM2G110057 No alias F-box family protein 0.02 Orthogroups_2024-Update
HORVU6Hr1G003000.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.5G454500.1 No alias Unknown function 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0008536 Ran GTPase binding IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
MF GO:0016759 cellulose synthase activity IEP Predicted GO
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP Predicted GO
MF GO:0017016 Ras GTPase binding IEP Predicted GO
BP GO:0030243 cellulose metabolic process IEP Predicted GO
BP GO:0030244 cellulose biosynthetic process IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!